NixOS · Oct 22, 2019 · Oct 22, 2019 · Oct 22, 2019 · Oct 22, 2019 · Oct 22, 2019
diff --git a/pkgs/applications/science/biology/dcm2niix/default.nix b/pkgs/applications/science/biology/dcm2niix/default.nix
@@ -6,14 +6,14 @@
 }:
 
 stdenv.mkDerivation rec {
-  version = "1.0.20190410";
+  version = "1.0.20190902";
   pname = "dcm2niix";
 
   src = fetchFromGitHub {
     owner = "rordenlab";
     repo = "dcm2niix";
     rev = "v${version}";
-    sha256 = "1prwpvbi76xlpkhc4kadjhyyx0s71cs30hi6anknhfm6hdyd26ms";
+    sha256 = "0h8jsadgv831lqb0jhnaxm7lldirmnp5agrhgg5bcxvn860fl15b";
   };
 
   enableParallelBuilding = true;

diff --git a/pkgs/applications/science/math/nauty/default.nix b/pkgs/applications/science/math/nauty/default.nix
@@ -4,10 +4,10 @@
 }:
 stdenv.mkDerivation rec {
   pname = "nauty";
-  version = "26r11";
+  version = "26r12";
   src = fetchurl {
     url = "http://pallini.di.uniroma1.it/nauty${version}.tar.gz";
-    sha256 = "05z6mk7c31j70md83396cdjmvzzip1hqb88pfszzc6k4gy8h3m2y";
+    sha256 = "1p4mxf8q5wm47nxyskxbqwa5p1vvkycv1zgswvnk9nsn6vff0al6";
   };
   outputs = [ "out" "dev" ];
   configureFlags = {

diff --git a/pkgs/desktops/pantheon/apps/elementary-files/default.nix b/pkgs/desktops/pantheon/apps/elementary-files/default.nix
@@ -5,7 +5,7 @@
 , meson
 , ninja
 , gettext
-, vala
+, vala_0_44
 , python3
 , desktop-file-utils
 , libcanberra
@@ -56,7 +56,7 @@ stdenv.mkDerivation rec {
     ninja
     pkgconfig
     python3
-    vala
+    vala_0_44 # https://github.com/elementary/files/issues/1081
     wrapGAppsHook
   ];
 

diff --git a/pkgs/development/libraries/mimalloc/default.nix b/pkgs/development/libraries/mimalloc/default.nix
@@ -7,13 +7,13 @@ let
 in
 stdenv.mkDerivation rec {
   name    = "mimalloc-${version}";
-  version = "1.0.8";
+  version = "1.1.0";
 
   src = fetchFromGitHub {
     owner  = "microsoft";
     repo   = "mimalloc";
     rev    = "refs/tags/v${version}";
-    sha256 = "04k2d3x84q2jfqdjxngy98hlw6czmigsqlf7gi3mhs6682n127r5";
+    sha256 = "1i8pwzpcmbf7dxncb984xrnczn1737xqhf1jaizlyw0k1hpiam4v";
   };
 
   nativeBuildInputs = [ cmake ];

diff --git a/pkgs/development/libraries/nlohmann_json/default.nix b/pkgs/development/libraries/nlohmann_json/default.nix
@@ -3,13 +3,13 @@
 
 stdenv.mkDerivation rec {
   pname = "nlohmann_json";
-  version = "3.6.1";
+  version = "3.7.0";
 
   src = fetchFromGitHub {
     owner = "nlohmann";
     repo = "json";
     rev = "v${version}";
-    sha256 = "1dgx3j9pb0f52dh73z8dpwdy79bra1qi5vpl66b9inq4gamf813z";
+    sha256 = "0v7xih4zjixxxfvkfbs7a8j9qcvpwlsv4vrkbyns3hc7b44nb8ap";
   };
 
   nativeBuildInputs = [ cmake ];
@@ -18,10 +18,13 @@ stdenv.mkDerivation rec {
 
   cmakeFlags = [
     "-DBuildTests=${if doCheck then "ON" else "OFF"}"
+    "-DJSON_MultipleHeaders=ON"
   ];
 
   doCheck = stdenv.hostPlatform == stdenv.buildPlatform;
 
+  postInstall = "rm -rf $out/lib64";
+
   meta = with stdenv.lib; {
     description = "Header only C++ library for the JSON file format";
     homepage = https://github.com/nlohmann/json;

diff --git a/pkgs/development/libraries/openvdb/default.nix b/pkgs/development/libraries/openvdb/default.nix
@@ -3,13 +3,13 @@
 stdenv.mkDerivation rec
 {
   pname = "openvdb";
-  version = "6.2.0";
+  version = "6.2.1";
 
   src = fetchFromGitHub {
     owner = "dreamworksanimation";
     repo = "openvdb";
     rev = "v${version}";
-    sha256 = "0ms7jmx9nsza46bky42vyb6n6p29kfjfidqg51kccvirzi07crvq";
+    sha256 = "1ypkzdkgsbcczfvrqblnxfzm13w0mdkskgqmgvmbfi66vpaazdrf";
   };
 
   outputs = [ "out" ];

diff --git a/pkgs/development/tools/analysis/flow/default.nix b/pkgs/development/tools/analysis/flow/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "flow";
-  version = "0.109.0";
+  version = "0.110.0";
 
   src = fetchFromGitHub {
     owner  = "facebook";
     repo   = "flow";
     rev    = "refs/tags/v${version}";
-    sha256 = "0wfhy7r85s2bxhfkmcdp7p1gaqjxr4yzay52k680hv6ghhay2318";
+    sha256 = "0w0z4pgwwvi12kvfg5xdjc83qw030a0c58cgr5rz3xzw2pgbdfm2";
   };
 
   installPhase = ''

diff --git a/pkgs/servers/memcached/default.nix b/pkgs/servers/memcached/default.nix
@@ -1,12 +1,12 @@
 {stdenv, fetchurl, cyrus_sasl, libevent}:
 
 stdenv.mkDerivation rec {
-  version = "1.5.18";
+  version = "1.5.19";
   pname = "memcached";
 
   src = fetchurl {
     url = "https://memcached.org/files/${pname}-${version}.tar.gz";
-    sha256 = "127g4l0ilb376dpgz6qby24vc72ban35c938dzmp1nh6bdqddgcy";
+    sha256 = "1q2bb858iwc1jncav5vfl8c7dic9r1wqni5724qmy8ads6idmp1x";
   };
 
   configureFlags = [

diff --git a/pkgs/tools/networking/openapi-generator-cli/default.nix b/pkgs/tools/networking/openapi-generator-cli/default.nix
@@ -1,7 +1,7 @@
 { stdenv, fetchurl, jre, makeWrapper }:
 
 stdenv.mkDerivation rec {
-  version = "4.1.2";
+  version = "4.1.3";
   pname = "openapi-generator-cli";
 
   jarfilename = "${pname}-${version}.jar";
@@ -12,7 +12,7 @@ stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "http://central.maven.org/maven2/org/openapitools/${pname}/${version}/${jarfilename}";
-    sha256 = "18f5ksngx6afh7rrw9aiw7q6yx801qflbbbqc7i28b68l9dh5qy4";
+    sha256 = "0bqdjparv12wscq4qhm9xnryyfmdnn3w77hrhnsy8mlvxk2vnk13";
   };
 
   phases = [ "installPhase" ];

diff --git a/pkgs/tools/package-management/nix/default.nix b/pkgs/tools/package-management/nix/default.nix
@@ -10,7 +10,7 @@ let
 
 common =
   { lib, stdenv, fetchpatch, perl, curl, bzip2, sqlite, openssl ? null, xz
-  , pkgconfig, boehmgc, perlPackages, libsodium, brotli, boost, editline
+  , pkgconfig, boehmgc, perlPackages, libsodium, brotli, boost, editline, nlohmann_json
   , autoreconfHook, autoconf-archive, bison, flex, libxml2, libxslt, docbook5, docbook_xsl_ns, jq
   , busybox-sandbox-shell
   , storeDir
@@ -39,7 +39,7 @@ common =
         ++ lib.optionals (!is20) [ curl perl ]
         ++ lib.optionals fromGit [ autoreconfHook autoconf-archive bison flex libxml2 libxslt docbook5 docbook_xsl_ns jq ];
 
-      buildInputs = [ curl openssl sqlite xz bzip2 ]
+      buildInputs = [ curl openssl sqlite xz bzip2 nlohmann_json ]
         ++ lib.optional (stdenv.isLinux || stdenv.isDarwin) libsodium
         ++ lib.optionals is20 [ brotli boost editline ]
         ++ lib.optional withLibseccomp libseccomp
@@ -201,12 +201,12 @@ in rec {
 
   nixFlakes = lib.lowPrio (callPackage common rec {
     name = "nix-2.4${suffix}";
-    suffix = "pre20190922_382aa05";
+    suffix = "pre20191022_9cac895";
     src = fetchFromGitHub {
       owner = "NixOS";
       repo = "nix";
-      rev = "382aa05ff71b61379f5c2792eaf517bdf4a5c5bf";
-      hash = "sha256-k4vV3Q1YVmLd+49AETnsSGetpDjD6sdd9yBrnpi8Q3g=";
+      rev = "9cac895406724e0304dff140379783c4d786e855";
+      hash = "sha256-Y1cdnCNoJmjqyC/a+Nt2N+5L3Ttg7K7zOD7gmtg1QzA=";
     };
     fromGit = true;