NixOS · Oct 5, 2019 · Oct 6, 2019 · Oct 6, 2019 · Oct 7, 2019 · Oct 7, 2019
diff --git a/nixos/doc/manual/release-notes/rl-1909.xml b/nixos/doc/manual/release-notes/rl-1909.xml
@@ -530,6 +530,17 @@
       The <literal>nodejs-11_x</literal> package has been removed as it's EOLed by upstream.
      </para>
    </listitem>
+   <listitem>
+     <para>
+       Because of the systemd upgrade,
+       <application>systemd-timesyncd</application> will no longer work if
+       <option>system.stateVersion</option> is not set correctly. When
+       upgrading from NixOS 19.03, please make sure that
+       <option>system.stateVersion</option> is set to
+       <literal>"19.03"</literal>, or lower if the installation dates back to an
+       earlier version of NixOS.
+     </para>
+   </listitem>
   </itemizedlist>
  </section>
 
@@ -728,7 +739,7 @@
       </para>
      </listitem>
     </itemizedlist>
-     This also configures the kernel to pass coredumps to <literal>systemd-coredump</literal>,
+     This also configures the kernel to pass core dumps to <literal>systemd-coredump</literal>,
      and restricts the SysRq key combinations to the sync command only.
      These sysctl snippets can be found in <literal>/etc/sysctl.d/50-*.conf</literal>,
      and overridden via <link linkend="opt-boot.kernel.sysctl">boot.kernel.sysctl</link>
@@ -737,12 +748,15 @@
    </listitem>
    <listitem>
     <para>
-      Coredumps are now acquired by <literal>systemd-coredump</literal> by default.
-      <literal>systemd-coredump</literal> behaviour can still be modified via
-      <option>systemd.coredump.extraConfig</option>.
-      To stick to the old behaviour (having the kernel dump to a file called <literal>core</literal>
-      in the working directory), without piping it through <literal>systemd-coredump</literal>, set
-      <option>boot.kernel.sysctl."kernel.core_pattern"</option> to <literal>"core"</literal>.
+      Core dumps are now processed by <literal>systemd-coredump</literal>
+      by default. <literal>systemd-coredump</literal> behaviour can
+      still be modified via
+      <option>systemd.coredump.extraConfig</option>. To stick to the
+      old behaviour (having the kernel dump to a file called
+      <literal>core</literal> in the working directory), without piping
+      it through <literal>systemd-coredump</literal>, set
+      <option>systemd.coredump.enable</option> to
+      <literal>false</literal>.
     </para>
    </listitem>
    <listitem>

diff --git a/nixos/lib/make-disk-image.nix b/nixos/lib/make-disk-image.nix
@@ -180,17 +180,9 @@ let format' = format; in let
     export NIX_STATE_DIR=$TMPDIR/state
     nix-store --load-db < ${closureInfo}/registration
 
-    mkdir -m 0755 -p "$root/etc"
-    touch "$root/etc/NIXOS"
-
-    echo "copying system..."
-    nix-env --store "$root" --substituters "auto?trusted=1" \
-        -p "$root/nix/var/nix/profiles/system" --set "${config.system.build.toplevel}" --quiet
-
-    echo "copying channel..."
-    mkdir -p "$root/nix/var/nix/profiles/per-user/root"
-    nix-env --store "$root" --substituters "auto?trusted=1" \
-        -p "$root/nix/var/nix/profiles/per-user/root/channels" --set "${channelSources}" --quiet
+    echo "running nixos-install..."
+    nixos-install --root $root --no-bootloader --no-root-passwd \
+      --system ${config.system.build.toplevel} --channel ${channelSources} --substituters ""
 
     echo "copying staging root to image..."
     cptofs -p ${optionalString (partitionTableType != "none") "-P ${rootPartition}"} -t ${fsType} -i $diskImage $root/* /

diff --git a/nixos/modules/rename.nix b/nixos/modules/rename.nix
@@ -233,7 +233,6 @@ with lib;
     (mkRemovedOptionModule [ "services" "mysql" "rootPassword" ] "Use socket authentication or set the password outside of the nix store.")
     (mkRemovedOptionModule [ "services" "zabbixServer" "dbPassword" ] "Use services.zabbixServer.database.passwordFile instead.")
     (mkRemovedOptionModule [ "systemd" "generator-packages" ] "Use systemd.packages instead.")
-    (mkRemovedOptionModule [ "systemd" "coredump" "enable" ] "Enabled by default. Set boot.kernel.sysctl.\"kernel.core_pattern\" = \"core\"; to disable.")
 
     # ZSH
     (mkRenamedOptionModule [ "programs" "zsh" "enableSyntaxHighlighting" ] [ "programs" "zsh" "syntaxHighlighting" "enable" ])

diff --git a/nixos/modules/system/boot/systemd.nix b/nixos/modules/system/boot/systemd.nix
@@ -546,6 +546,16 @@ in
       '';
     };
 
+    systemd.coredump.enable = mkOption {
+      default = true;
+      type = types.bool;
+      description = ''
+        Whether core dumps should be processed by
+        <command>systemd-coredump</command>. If disabled, core dumps
+        appear in the current directory of the crashing process.
+      '';
+    };
+
     systemd.coredump.extraConfig = mkOption {
       default = "";
       type = types.lines;
@@ -983,6 +993,10 @@ in
     # Don't bother with certain units in containers.
     systemd.services.systemd-remount-fs.unitConfig.ConditionVirtualization = "!container";
     systemd.services.systemd-random-seed.unitConfig.ConditionVirtualization = "!container";
+
+    boot.kernel.sysctl = mkIf (!cfg.coredump.enable) {
+      "kernel.core_pattern" = "core";
+    };
   };
 
   # FIXME: Remove these eventually.

diff --git a/pkgs/applications/audio/flacon/default.nix b/pkgs/applications/audio/flacon/default.nix
@@ -5,13 +5,13 @@
 
 stdenv.mkDerivation rec {
   pname = "flacon";
-  version = "5.4.0";
+  version = "5.5.1";
 
   src = fetchFromGitHub {
     owner = "flacon";
     repo = "flacon";
     rev = "v${version}";
-    sha256 = "1j8gzk92kn10yb7rmvrnyq0ipda2swnkmsavqsk5ws0z600p3k93";
+    sha256 = "05pvg5xhc2azwzld08m81r4b2krqdbcbm5lmdvg2zkk67xq9pqyd";
   };
 
   nativeBuildInputs = [ cmake pkgconfig makeWrapper ];

diff --git a/pkgs/applications/editors/eclipse/default.nix b/pkgs/applications/editors/eclipse/default.nix
@@ -13,10 +13,10 @@ assert stdenv ? glibc;
 
 let
   platform_major = "4";
-  platform_minor = "12";
+  platform_minor = "13";
   year = "2019";
-  month = "06";
-  timestamp = "201906051800";
+  month = "09";
+  timestamp = "201909161045";
 
 in rec {
 
@@ -34,7 +34,7 @@ in rec {
     src =
       fetchurl {
         url = "https://www.eclipse.org/downloads/download.php?r=1&nf=1&file=/technology/epp/downloads/release/${year}-${month}/R/eclipse-cpp-${year}-${month}-R-linux-gtk-x86_64.tar.gz";
-        sha512 = "3mfljabrwbwq256vvsp9qjb96hzlbpwgnb3wz806pbyh0ibfq6s1hn8kh5aaa2da5821v0ykcxa12jagj7naqp4g91jqxp1wb1ygz2q";
+        sha512 = "0s9wvxd1bahlcdw7l6cyfi59p78j6gym3a3mn1z6dm6swxgyb2wjjl7hx8bkg0zs8x31bwllpdq22y2vcm6j57h40v53l3xkhy73m8v";
       };
   };
 
@@ -46,7 +46,7 @@ in rec {
     src =
       fetchurl {
         url = "https://www.eclipse.org/downloads/download.php?r=1&nf=1&file=/technology/epp/downloads/release/${year}-${month}/R/eclipse-modeling-${year}-${month}-R-linux-gtk-x86_64.tar.gz";
-        sha512 = "18p6xz6rq4w6j39b2k9kjpz8s1nljfq44g2cmvxqjgjfkq8lk4ij73ssyv1raly4wkm7r22ixacswdjmyj942k5vpv9y11i91hp1scv";
+        sha512 = "09nc7ipv67h0gr7lkxsbxrgj9gn48348asn03ylcvflyrcxghqs8n11a75rwvdj98igdzpw922saicx5lqq5g2flfqiga97lwwhfiz5";
       };
   };
 
@@ -58,7 +58,7 @@ in rec {
     src =
       fetchurl {
         url = "https://www.eclipse.org/downloads/download.php?r=1&nf=1&file=/eclipse/downloads/drops${platform_major}/R-${platform_major}.${platform_minor}-${timestamp}/eclipse-platform-${platform_major}.${platform_minor}-linux-gtk-x86_64.tar.gz";
-        sha512 = "0qiyk95qhdqcfgg5hgc7pcpbpjy9jnx7l3vb7s4cgijdz2xz0n5psh11lpj3whk2amh4iwkyx7kn8fxdq7lm03rlgx67cbk7p8my16m";
+        sha512 = "2c40wwrc2ip32n0m5cs8ds0g7cs7018acw8gjkd23msa4pr9x9511c3dj6rbnn1hwzf9yjq6vnjmib5qarxd3vly76jwxhf867l1f7v";
       };
   };
 
@@ -88,7 +88,7 @@ in rec {
     src =
       fetchurl {
         url = "https://www.eclipse.org/downloads/download.php?r=1&nf=1&file=/eclipse/downloads/drops${platform_major}/R-${platform_major}.${platform_minor}-${timestamp}/eclipse-SDK-${platform_major}.${platform_minor}-linux-gtk-x86_64.tar.gz";
-        sha512 = "3bbc8d66ms7nhg6f8gb0bnzjqz26wixpipn4n9qf0azcplrv2j91z8hjw1fx39dx4pqnsf442bkgab4qqhkpks7qq54110l01q6gvy9";
+        sha512 = "2vm646d1crzzzysll3p5pjfljfjzxx4qd37dqcp6xjm91zg8iskli688h0lgla0rmbwz5kj509jp22m4rxkp3cbgd006dd0jr3icdls";
       };
   };
 
@@ -100,7 +100,7 @@ in rec {
     src =
       fetchurl {
         url = "https://www.eclipse.org/downloads/download.php?r=1&nf=1&file=/technology/epp/downloads/release/${year}-${month}/R/eclipse-java-${year}-${month}-R-linux-gtk-x86_64.tar.gz";
-        sha512 = "20qs1aagh4drsycvar3x42zy422zl34yg1p3vhxbqfbf7v3z1d3cxs9ah61x4bdxx9bkfwchasqp1wr15nflch9g0i50bdki3cgng1d";
+        sha512 = "3zyxqd8iwrfgjjg91dfi4bda61rd2717hy53swmbygi48zaaam70swx997yp5qzxwjp3macdslfk6sqhq2qlcdwcdl6dmkry018jh7b";
       };
   };
 

diff --git a/pkgs/applications/editors/eclipse/plugins.nix b/pkgs/applications/editors/eclipse/plugins.nix
@@ -254,12 +254,12 @@ rec {
 
   cdt = buildEclipseUpdateSite rec {
     name = "cdt-${version}";
-    version = "9.8.1";
+    version = "9.9.0";
 
     src = fetchzip {
       stripRoot = false;
-      url = "https://www.eclipse.org/downloads/download.php?r=1&nf=1&file=/tools/cdt/releases/9.8/${name}/${name}.zip";
-      sha256 = "0kxmwz75i8mv4wics9n0hspxhzl3glf5ry2v5mnl5j9gcf73b0nv";
+      url = "https://www.eclipse.org/downloads/download.php?r=1&nf=1&file=/tools/cdt/releases/9.9/${name}/${name}.zip";
+      sha256 = "1vgx7ggilfwmx0bjrhk7mwlwg1c8lb141ilj3vzwxivlffihy054";
     };
 
     meta = with stdenv.lib; {
@@ -474,12 +474,12 @@ rec {
 
   jdt = buildEclipseUpdateSite rec {
     name = "jdt-${version}";
-    version = "4.12";
+    version = "4.13";
 
     src = fetchzip {
       stripRoot = false;
-      url = https://www.eclipse.org/downloads/download.php?r=1&nf=1&file=/eclipse/downloads/drops4/R-4.12-201906051800/org.eclipse.jdt-4.12.zip;
-      sha256 = "0qscvqg69z4554n1yhl0xg1xz8ln3qsbgfzi7cg3xnnwnxfqz9cb";
+      url = https://www.eclipse.org/downloads/download.php?r=1&nf=1&file=/eclipse/downloads/drops4/R-4.13-201909161045/org.eclipse.jdt-4.13.zip;
+      sha256 = "0sfpxph0cszcx1cihzzjn60qid8sxgl2xyr9x46fld4ian5a7vbr";
     };
 
     meta = with stdenv.lib; {

diff --git a/pkgs/applications/editors/manuskript/default.nix b/pkgs/applications/editors/manuskript/default.nix
@@ -2,15 +2,15 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "manuskript";
-  version = "0.9.0";
+  version = "0.10.0";
 
   format = "other";
 
   src = fetchFromGitHub {
     repo = pname;
     owner = "olivierkes";
     rev = version;
-    sha256 = "13y1s0kba1ib6g977n7h920kyr7abdw03kpal512m7iwa9g2kdw8";
+    sha256 = "0q413vym7hzjpyg3krj5y63hwpncdifjkyswqmr76zg5yqnklnh3";
   };
 
   nativeBuildInputs = [ wrapQtAppsHook ];

diff --git a/pkgs/applications/misc/formatter/default.nix b/pkgs/applications/misc/formatter/default.nix
@@ -0,0 +1,70 @@
+{ stdenv
+, fetchFromGitHub
+, meson
+, ninja
+, pkgconfig
+, pantheon
+, python3
+, substituteAll
+, glib
+, gtk3
+, dosfstools
+, e2fsprogs
+, exfat
+, hfsprogs
+, ntfs3g
+, libgee
+, wrapGAppsHook
+}:
+
+stdenv.mkDerivation rec {
+  pname = "formatter";
+  version = "0.3.0";
+
+  src = fetchFromGitHub {
+    owner = "Djaler";
+    repo = "Formatter";
+    rev = version;
+    sha256 = "145742dk16736zxj30rzn61h4k0xpggfsbqkxllxd302mgbmxlzq";
+  };
+
+  patches = [
+    (substituteAll {
+      src = ./fix-paths.patch;
+      ext4 = "${e2fsprogs}/bin/mkfs.ext4";
+      exfat = "${exfat}/bin/mkfs.exfat";
+      fat = "${dosfstools}/bin/mkfs.fat";
+      ntfs = "${ntfs3g}/bin/mkfs.ntfs";
+      hfsplus = "${hfsprogs}/bin/mkfs.hfsplus";
+    })
+  ];
+
+  nativeBuildInputs = [
+    meson
+    ninja
+    pantheon.vala
+    pkgconfig
+    python3
+    wrapGAppsHook
+  ];
+
+  buildInputs = [
+    glib
+    gtk3
+    libgee
+    pantheon.granite
+  ];
+
+  postPatch = ''
+    chmod +x meson/post_install.py
+    patchShebangs meson/post_install.py
+  '';
+
+  meta = with stdenv.lib; {
+    description = "A simple formatter designed for elementary OS";
+    homepage = "https://github.com/Djaler/Formatter";
+    maintainers = with maintainers; [ kjuvi ] ++ pantheon.maintainers;
+    platforms = platforms.linux;
+    license = licenses.lgpl2Plus;
+  };
+}
diff --git a/pkgs/applications/misc/formatter/fix-paths.patch b/pkgs/applications/misc/formatter/fix-paths.patch
@@ -0,0 +1,53 @@
+diff --git a/src/Objects/DeviceFormatter.vala b/src/Objects/DeviceFormatter.vala
+index cf6a3b8..0de10a9 100644
+--- a/src/Objects/DeviceFormatter.vala
++++ b/src/Objects/DeviceFormatter.vala
+@@ -62,42 +62,42 @@ namespace Formatter {
+             string drive_identifier = drive.get_identifier ("unix-device");
+             switch (filesystem) {
+                 case Formatter.Filesystems.EXT4:
+-                    spawn_args = {"pkexec", "mkfs.ext4", drive_identifier, "-F"};
++                    spawn_args = {"pkexec", "@ext4@", drive_identifier, "-F"};
+                     if (label != "") {
+                         spawn_args += "-L";
+                         spawn_args += label;
+                     }
+                     break;
+                 case Formatter.Filesystems.EXFAT:
+-                    spawn_args = {"pkexec", "mkfs.exfat", drive_identifier};
++                    spawn_args = {"pkexec", "@exfat@", drive_identifier};
+                     if (label != "") {
+                         spawn_args += "-n";
+                         spawn_args += label;
+                     }
+                     break;
+                 case Formatter.Filesystems.FAT16:
+-                    spawn_args = {"pkexec", "mkfs.fat", "-F16", "-I", drive_identifier};
++                    spawn_args = {"pkexec", "@fat@", "-F16", "-I", drive_identifier};
+                     if (label != "") {
+                         spawn_args += "-n";
+                         spawn_args += label;
+                     }
+                     break;
+                 case Formatter.Filesystems.FAT32:
+-                    spawn_args = {"pkexec", "mkfs.fat", "-F32", "-I", drive_identifier};
++                    spawn_args = {"pkexec", "@fat@", "-F32", "-I", drive_identifier};
+                     if (label != "") {
+                         spawn_args += "-n";
+                         spawn_args += label;
+                     }
+                     break;
+                 case Formatter.Filesystems.NTFS:
+-                    spawn_args = {"pkexec", "mkfs.ntfs", drive_identifier, "-f", "-F"};
++                    spawn_args = {"pkexec", "@ntfs@", drive_identifier, "-f", "-F"};
+                     if (label != "") {
+                         spawn_args += "-L";
+                         spawn_args += label;
+                     }
+                     break;
+                 case Formatter.Filesystems.HFS_PLUS:
+-                    spawn_args = {"pkexec", "mkfs.hfsplus", drive_identifier};
++                    spawn_args = {"pkexec", "@hfsplus@", drive_identifier};
+                     if (label != "") {
+                         spawn_args += "-v";
+                         spawn_args += label;
diff --git a/pkgs/applications/misc/girara/default.nix b/pkgs/applications/misc/girara/default.nix
@@ -3,13 +3,13 @@
 
 stdenv.mkDerivation rec {
   pname = "girara";
-  version = "0.3.2";
+  version = "0.3.3";
 
   outputs = [ "out" "dev" ];
 
   src = fetchurl {
-    url = "https://pwmt.org/projects/girara/download/${pname}-${version}.tar.xz";
-    sha256 = "1kc6n1mxjxa7wvwnqy94qfg8l9jvx9qrvrr2kc7m4g0z20x3a00p";
+    url = "https://git.pwmt.org/pwmt/${pname}/-/archive/${version}/${pname}-${version}.tar.gz";
+    sha256 = "13vr62kkkqs2xsrmsn114n6c6084ix1qyjksczqsc3s2y3bdsmj4";
   };
 
   nativeBuildInputs = [ meson ninja pkgconfig gettext check dbus xvfb_run ];
@@ -30,7 +30,7 @@ stdenv.mkDerivation rec {
   '';
 
   meta = with stdenv.lib; {
-    homepage = https://pwmt.org/projects/girara/;
+    homepage = "https://git.pwmt.org/pwmt/girara";
     description = "User interface library";
     longDescription = ''
       girara is a library that implements a GTK based VIM-like user interface

diff --git a/pkgs/applications/misc/zathura/core/default.nix b/pkgs/applications/misc/zathura/core/default.nix
@@ -10,11 +10,11 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   pname = "zathura-core";
-  version = "0.4.3";
+  version = "0.4.4";
 
   src = fetchurl {
-    url = "https://pwmt.org/projects/zathura/download/zathura-${version}.tar.xz";
-    sha256 = "0hgx5x09i6d0z45llzdmh4l348fxh1y102sb1w76f2fp4r21j4ky";
+    url = "https://git.pwmt.org/pwmt/zathura/-/archive/${version}/zathura-${version}.tar.gz";
+    sha256 = "0v5klgr009rsxi41h73k0398jbgmgh37asvwz2w15i4fzmw89jgb";
   };
 
   outputs = [ "bin" "man" "dev" "out" ];
@@ -44,7 +44,7 @@ stdenv.mkDerivation rec {
   doCheck = true;
 
   meta = {
-    homepage = https://pwmt.org/projects/zathura/;
+    homepage = "https://git.pwmt.org/pwmt/zathura";
     description = "A core component for zathura PDF viewer";
     license = licenses.zlib;
     platforms = platforms.unix;

diff --git a/pkgs/applications/networking/cluster/spark/default.nix b/pkgs/applications/networking/cluster/spark/default.nix
@@ -1,26 +1,18 @@
 { stdenv, fetchzip, makeWrapper, jre, pythonPackages, coreutils, hadoop
 , RSupport? true, R
 , mesosSupport ? true, mesos
-, version
 }:
 
-let
-  sha256 = {
-    "1.6.3" = "142hw73wf20d846l83ydx0yg7qj5qxywm4h7qrhwnd7lsy2sbnjf";
-    "2.4.3" = "1dvvr1q3dz961bl7qigxngrp4ssrbll3g1s6nkra6gyr83pis96c"; 
-  }.${version};
-in
-
 with stdenv.lib;
 
 stdenv.mkDerivation rec {
 
   pname = "spark";
-  inherit version;
+  version = "2.4.4";
 
   src = fetchzip {
-    inherit sha256;
     url    = "mirror://apache/spark/${pname}-${version}/${pname}-${version}-bin-without-hadoop.tgz";
+    sha256 = "1a9w5k0207fysgpxx6db3a00fs5hdc2ncx99x4ccy2s0v5ndc66g"; 
   };
 
   buildInputs = [ makeWrapper jre pythonPackages.python pythonPackages.numpy ]

diff --git a/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix b/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix
@@ -19,12 +19,12 @@ let
 
   version = {
     x86_64-linux = "3.10.2904";
-    x86_64-darwin = "3.10.3133";
+    x86_64-darwin = "3.10.3215";
   }.${system} or throwSystem;
 
   sha256 = {
     x86_64-linux = "1vrz4568mlhylx17jw4z452f0vrd8yd8qkbpkcvnsbhs6k066xcn";
-    x86_64-darwin = "0d8g9fl3yciqp3aic374rzcywb5d5yipgni992khsfdfqhcvm3x9";
+    x86_64-darwin = "0ygm3fgy9k1dp2kjfwsrrwq1i88wgxc6k8y80yz61ivdawgph9wa";
   }.${system} or throwSystem;
 
   meta = with stdenv.lib; {

diff --git a/pkgs/applications/networking/mumble/default.nix b/pkgs/applications/networking/mumble/default.nix
@@ -1,32 +1,28 @@
-{ stdenv, fetchurl, fetchFromGitHub, fetchpatch, pkgconfig
-, qt4, qmake4Hook, qt5, avahi, boost, libopus, libsndfile, protobuf3_6, speex, libcap
+{ stdenv, fetchurl, fetchFromGitHub, fetchpatch, pkgconfig, mkDerivation
+, qtbase, qttools, qtsvg, qmake, avahi, boost, libopus, libsndfile, protobuf, speex, libcap
 , alsaLib, python
 , jackSupport ? false, libjack2 ? null
 , speechdSupport ? false, speechd ? null
 , pulseSupport ? false, libpulseaudio ? null
-, iceSupport ? false, zeroc-ice ? null, zeroc-ice-36 ? null
+, iceSupport ? false, zeroc-ice ? null
 }:
 
 assert jackSupport -> libjack2 != null;
 assert speechdSupport -> speechd != null;
 assert pulseSupport -> libpulseaudio != null;
-assert iceSupport -> zeroc-ice != null && zeroc-ice-36 != null;
+assert iceSupport -> zeroc-ice != null;
 
 with stdenv.lib;
 let
-  generic = overrides: source: (if source.qtVersion == 5 then qt5.mkDerivation else stdenv.mkDerivation) (source // overrides // {
+  generic = overrides: source: mkDerivation (source // overrides // {
     name = "${overrides.type}-${source.version}";
 
     patches = (source.patches or []) ++ optional jackSupport ./mumble-jack-support.patch;
 
-    nativeBuildInputs = [ pkgconfig python ]
-      ++ { qt4 = [ qmake4Hook ]; qt5 = [ qt5.qmake ]; }."qt${toString source.qtVersion}"
+    nativeBuildInputs = [ pkgconfig python qmake ]
       ++ (overrides.nativeBuildInputs or [ ]);
 
-    # protobuf is freezed to 3.6 because of this bug: https://github.com/mumble-voip/mumble/issues/3617
-    # this could be reverted to the latest version in a future release of mumble as it is already fixed in master
-    buildInputs = [ boost protobuf3_6 avahi ]
-      ++ optional (source.qtVersion == 4) qt4
+    buildInputs = [ boost protobuf avahi ]
       ++ (overrides.buildInputs or [ ]);
 
     qmakeFlags = [
@@ -76,9 +72,8 @@ let
   client = source: generic {
     type = "mumble";
 
-    nativeBuildInputs = optional (source.qtVersion == 5) qt5.qttools;
-    buildInputs = [ libopus libsndfile speex ]
-      ++ optional (source.qtVersion == 5) qt5.qtsvg
+    nativeBuildInputs = [ qttools ];
+    buildInputs = [ libopus libsndfile speex qtsvg ]
       ++ optional stdenv.isLinux alsaLib
       ++ optional jackSupport libjack2
       ++ optional speechdSupport speechd
@@ -107,67 +102,38 @@ let
     '';
   } source;
 
-  server = source: let ice = if source.qtVersion == 4 then zeroc-ice-36 else zeroc-ice; in generic {
+  server = source: generic {
     type = "murmur";
 
     postPatch = optional iceSupport ''
-      grep -Rl '/usr/share/Ice' . | xargs sed -i 's,/usr/share/Ice/,${ice.dev}/share/ice/,g'
+      grep -Rl '/usr/share/Ice' . | xargs sed -i 's,/usr/share/Ice/,${zeroc-ice.dev}/share/ice/,g'
     '';
 
     configureFlags = [
       "CONFIG+=no-client"
     ] ++ optional (!iceSupport) "CONFIG+=no-ice";
 
-    buildInputs = [ libcap ] ++ optional iceSupport ice;
+    buildInputs = [ libcap ] ++ optional iceSupport zeroc-ice;
 
     installPhase = ''
       # bin stuff
       install -Dm755 release/murmurd $out/bin/murmurd
     '';
   } source;
 
-  stableSource = rec {
-    version = "1.2.19";
-    qtVersion = 4;
-
-    src = fetchurl {
-      url = "https://github.com/mumble-voip/mumble/releases/download/${version}/mumble-${version}.tar.gz";
-      sha256 = "1s60vaici3v034jzzi20x23hsj6mkjlc0glipjq4hffrg9qgnizh";
-    };
-
-    patches = [
-      # Fix compile error against boost 1.66 (#33655):
-      (fetchpatch {
-        url = "https://github.com/mumble-voip/mumble/commit/"
-            + "ea861fe86743c8402bbad77d8d1dd9de8dce447e.patch";
-        sha256 = "1r50dc8dcl6jmbj4abhnay9div7y56kpmajzqd7ql0pm853agwbh";
-      })
-      # Fixes hang on reconfiguring audio (often including startup)
-      # https://github.com/mumble-voip/mumble/pull/3418
-      (fetchpatch {
-        url = "https://github.com/mumble-voip/mumble/commit/"
-            + "fbbdf2e8ab7d93ed6f7680268ad0689b7eaa71ad.patch";
-        sha256 = "1yhj62mlwm6q42i4aclbia645ha97d3j4ycxhgafr46dbjs0gani";
-      })
-    ];
-  };
-
-  rcSource = rec {
-    version = "1.3.0-rc2";
-    qtVersion = 5;
+  source = rec {
+    version = "1.3.0";
 
     # Needs submodules
     src = fetchFromGitHub {
       owner = "mumble-voip";
       repo = "mumble";
       rev = version;
-      sha256 = "00irlzz5q4drmsfbwrkyy7p7w8a5fc1ip5vyicq3g3cy58dprpqr";
+      sha256 = "0g5ri84gg0x3crhpxlzawf9s9l4hdna6aqw6qbdpx1hjlf5k6g8k";
       fetchSubmodules = true;
     };
   };
 in {
-  mumble     = client stableSource;
-  mumble_rc  = client rcSource;
-  murmur     = server stableSource;
-  murmur_rc  = server rcSource;
+  mumble  = client source;
+  murmur  = server source;
 }
diff --git a/pkgs/applications/networking/znc/default.nix b/pkgs/applications/networking/znc/default.nix
@@ -13,11 +13,11 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   pname = "znc";
-  version = "1.7.4";
+  version = "1.7.5";
 
   src = fetchurl {
     url = "https://znc.in/releases/archive/${pname}-${version}.tar.gz";
-    sha256 = "0wcvqkpin8w4i72alnn0nxnrc9ih543qs34hqpk9xmz6m0hjk8xi";
+    sha256 = "08a7yb2xs85hyyz8dpzfbsfjwj2r6kcii022lj3l4rf8hl9ix558";
   };
 
   nativeBuildInputs = [ pkgconfig ];

diff --git a/pkgs/applications/science/electronics/gtkwave/default.nix b/pkgs/applications/science/electronics/gtkwave/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "gtkwave";
-  version = "3.3.101";
+  version = "3.3.102";
 
   src = fetchurl {
     url    = "mirror://sourceforge/gtkwave/${pname}-${version}.tar.gz";
-    sha256 = "1j6capxwgi8aj3sgqg1r7161icni9y8y93g1rl3bzd3s40jcyhsz";
+    sha256 = "1izyfx6b1n9nr08c7q0gkgcf0q04bb4qz92ckwh74n5l5nwprfw0";
   };
 
   nativeBuildInputs = [ pkgconfig ];

diff --git a/pkgs/applications/version-management/fossil/default.nix b/pkgs/applications/version-management/fossil/default.nix
@@ -5,15 +5,15 @@
 
 stdenv.mkDerivation rec {
   pname = "fossil";
-  version = "2.9";
+  version = "2.10";
 
   src = fetchurl {
     urls =
       [
         "https://www.fossil-scm.org/index.html/uv/fossil-src-${version}.tar.gz"
       ];
     name = "${pname}-${version}.tar.gz";
-    sha256 = "0kwb7pkp7y2my916rhyl6kmcf0fk8gkzaxzy13hfgqs35nlsvchw";
+    sha256 = "041bs4fgk52fw58p7s084pxk9d9vs5v2f2pjbznqawz75inpg8yq";
   };
 
   buildInputs = [ zlib openssl readline sqlite which ed ]

diff --git a/pkgs/applications/version-management/git-and-tools/git-remote-hg/default.nix b/pkgs/applications/version-management/git-and-tools/git-remote-hg/default.nix
@@ -4,13 +4,13 @@
 
 stdenv.mkDerivation rec {
   pname = "git-remote-hg";
-  version = "1.0.0";
+  version = "1.0.1";
 
   src = fetchFromGitHub {
     owner = "mnauw";
     repo = "git-remote-hg";
     rev = "v${version}";
-    sha256 = "0anl054zdi5rg5m4bm1n763kbdjkpdws3c89c8w8m5gq1ifsbd4d";
+    sha256 = "1by5ygqvq9ww990kdrjndaqsssyf2jc4n380f9pfh2avsr7871wc";
   };
 
   buildInputs = [ mercurial.python mercurial makeWrapper

diff --git a/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix b/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix
@@ -55,6 +55,8 @@ in stdenv.mkDerivation {
     ${if stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux" then ''
         isoinfo -J -i $src -x /VBoxLinuxAdditions.run > ./VBoxLinuxAdditions.run
         chmod 755 ./VBoxLinuxAdditions.run
+        # An overflow leads the is-there-enough-space check to fail when there's too much space available, so fake how much space there is
+        sed -i 's/\$leftspace/16383/' VBoxLinuxAdditions.run
         ./VBoxLinuxAdditions.run --noexec --keep
       ''
       else throw ("Architecture: "+stdenv.hostPlatform.system+" not supported for VirtualBox guest additions")

diff --git a/pkgs/desktops/gnome-3/extensions/mpris-indicator-button/default.nix b/pkgs/desktops/gnome-3/extensions/mpris-indicator-button/default.nix
@@ -0,0 +1,32 @@
+{ stdenv
+, fetchFromGitHub
+, gnome3
+}:
+
+stdenv.mkDerivation rec {
+  pname = "gnome-shell-extension-mpris-indicator-button-unstable";
+  version = "2019-09-29";
+
+  src = fetchFromGitHub {
+    owner = "JasonLG1979";
+    repo = "gnome-shell-extension-mpris-indicator-button";
+    rev = "6cdc28a8bde98f25618b27ee48280996e2b4a0f8";
+    sha256 = "1n3sh3phpa75y3vpc09wnzhis0m92zli1m46amzsdbvmk6gkifif";
+  };
+
+  uuid = "mprisindicatorbutton@JasonLG1979.github.io";
+
+  installPhase = ''
+    mkdir -p $out/share/gnome-shell/extensions
+    cp -r ${uuid} $out/share/gnome-shell/extensions
+  '';
+
+  meta = with stdenv.lib; {
+    description = "A simple MPRIS indicator button for GNOME Shell";
+    license = licenses.gpl3;
+    maintainers = with maintainers; [ worldofpeace ];
+    platforms = gnome3.gnome-shell.meta.platforms;
+    homepage = "https://github.com/JasonLG1979/gnome-shell-extension-mpris-indicator-button";
+    broken = versionOlder gnome3.gnome-shell.version "3.34";
+  };
+}
diff --git a/pkgs/development/libraries/jitterentropy/default.nix b/pkgs/development/libraries/jitterentropy/default.nix
@@ -1,13 +1,13 @@
 { stdenv, fetchFromGitHub }:
 stdenv.mkDerivation rec {
   pname = "jitterentropy";
-  version = "2.1.2";
+  version = "2.2.0";
 
   src = fetchFromGitHub {
     owner = "smuellerDD";
     repo = "jitterentropy-library";
     rev = "v${version}";
-    sha256 = "10yl1hi0hysr53wzy2i8brs0qqnxh46mz3dcjh5mk0ad03wvbfsl";
+    sha256 = "0n2l1fxr7bynnarpwdjifb2fvlsq8w5wmfh31yk5nrc756cjlgyw";
   };
 
   enableParallelBuilding = true;

diff --git a/pkgs/development/libraries/libraw/default.nix b/pkgs/development/libraries/libraw/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "libraw";
-  version = "0.19.3";
+  version = "0.19.5";
 
   src = fetchurl {
     url = "https://www.libraw.org/data/LibRaw-${version}.tar.gz";
-    sha256 = "0xs1qb6pcvc4c43fy5xi3nkqxcif77gakkw99irf0fc5iccdd5px";
+    sha256 = "1x827sh6vl8j3ll2ihkcr234y07f31hi1v7sl08jfw3irkbn58j0";
   };
 
   outputs = [ "out" "lib" "dev" "doc" ];

diff --git a/pkgs/development/libraries/libx86emu/default.nix b/pkgs/development/libraries/libx86emu/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "libx86emu";
-  version = "2.3";
+  version = "2.4";
 
   src = fetchFromGitHub {
     owner = "wfeldt";
     repo = "libx86emu";
     rev = version;
-    sha256 = "158mrg9xb0sb4l3s60084j6i7nr90smpsks9f02gbssk495h2k8l";
+    sha256 = "0r55ij8f5mab2kg6kvy5n2bw6avzp75nsxigbzy7dgik9zwsxvr4";
   };
 
   nativeBuildInputs = [ perl ];

diff --git a/pkgs/development/libraries/libxl/default.nix b/pkgs/development/libraries/libxl/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "libxl";
-  version = "3.8.4";
+  version = "3.8.5";
 
   src = fetchurl {
     url = "http://www.libxl.com/download/${pname}-lin-${version}.tar.gz";
-    sha256 = "0jnvc9ilir3lvs81l6ldnyf6jbfsy7bcs5pkc75qfnvz01y7p6as";
+    sha256 = "15n8gxyznk1nm2kgp86hd36rnivjsby9ccl12lyabv6q3fab6fsx";
   };
 
   phases = [ "unpackPhase" "installPhase" "fixupPhase" ];

diff --git a/pkgs/development/python-modules/foxdot/default.nix b/pkgs/development/python-modules/foxdot/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "FoxDot";
-  version = "0.8.1";
+  version = "0.8.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "147n2c9rwmrby8rr6xfxlh7mfm12lqk2a7v1gxlzhq1i2jj1j5h4";
+    sha256 = "07ll1rh1bkq1dpb7gxd86jsjhxni73kp9iljiy0d2b86ji8h108p";
   };
 
   propagatedBuildInputs = [ tkinter supercollider ];

diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix
@@ -30,11 +30,11 @@ let
 
 in buildPythonPackage rec {
   pname = "pandas";
-  version = "0.25.0";
+  version = "0.25.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "914341ad2d5b1ea522798efa4016430b66107d05781dbfe7cf05eba8f37df995";
+    sha256 = "1xm9dmbngsq46vj836csnb5j0bs88b1d713b0b5vx1q6gdxijbnb";
   };
 
   checkInputs = [ pytest glibcLocales moto hypothesis ];

diff --git a/pkgs/development/tools/packer/default.nix b/pkgs/development/tools/packer/default.nix
@@ -1,7 +1,7 @@
 { stdenv, buildGoPackage, fetchFromGitHub }:
 buildGoPackage rec {
   pname = "packer";
-  version = "1.4.1";
+  version = "1.4.4";
 
   goPackagePath = "github.com/hashicorp/packer";
 
@@ -11,7 +11,7 @@ buildGoPackage rec {
     owner = "hashicorp";
     repo = "packer";
     rev = "v${version}";
-    sha256 = "13pj48pbhl47rwyi6gd6dhq9wq0z2h8kzjkahhqhf62dfssv35db";
+    sha256 = "00il85qbj5yadm5l5bczv7awmaazn9k3v3i0wsd6dbwpjga6snw9";
   };
 
   meta = with stdenv.lib; {

diff --git a/pkgs/misc/emulators/mgba/default.nix b/pkgs/misc/emulators/mgba/default.nix
@@ -15,13 +15,13 @@ let
   };
 in stdenv.mkDerivation rec {
   pname = "mgba";
-  version = "0.7.2";
+  version = "0.7.3";
 
   src = fetchFromGitHub {
     owner = "mgba-emu";
     repo = "mgba";
     rev = version;
-    sha256 = "0g0xa1mzvan0sl1p5c784j2g5mcw9kd2b7wiahy06gy0c1nmbcnp";
+    sha256 = "1wrmwh50rv8bd328r8cisrihq6h90kx2bfb0vmjfbsd3l1jvgrgm";
   };
 
   enableParallelBuilding = true;

diff --git a/pkgs/tools/misc/entr/default.nix b/pkgs/tools/misc/entr/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "entr";
-  version = "4.2";
+  version = "4.3";
 
   src = fetchurl {
     url = "http://entrproject.org/code/${pname}-${version}.tar.gz";
-    sha256 = "0w2xkf77jikcjh15fp9g7661ss30pz3jbnh261vqpaqavwah4c17";
+    sha256 = "0ni34sfrssa6njiqm22q2kxv437r6vbs0a6mys8kwwn7vbdw30dh";
   };
 
   postPatch = ''

diff --git a/pkgs/tools/security/clamav/default.nix b/pkgs/tools/security/clamav/default.nix
@@ -5,11 +5,11 @@
 
 stdenv.mkDerivation rec {
   pname = "clamav";
-  version = "0.101.4";
+  version = "0.102.0";
 
   src = fetchurl {
     url = "https://www.clamav.net/downloads/production/${pname}-${version}.tar.gz";
-    sha256 = "1kdw0b49hbvja6xn589v4f0q334wav16pmi1hibql5cxj7q99w0b";
+    sha256 = "1qdyj4r39266bmbsd2nwyspm20k9wh3c30awrg8c54y78s61izj8";
   };
 
   # don't install sample config files into the absolute sysconfdir folder

diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
@@ -443,8 +443,8 @@ mapAliases ({
   };
 
   # added 2019-08-01
-  mumble_git = pkgs.mumble_rc;
-  murmur_git = pkgs.murmur_rc;
+  mumble_git = pkgs.mumble;
+  murmur_git = pkgs.murmur;
 
   # added 2019-09-06
   zeroc_ice = pkgs.zeroc-ice;

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
@@ -9012,8 +9012,7 @@ in
 
   self = pkgsi686Linux.callPackage ../development/interpreters/self { };
 
-  spark = spark_24;
-  spark_24 = callPackage ../applications/networking/cluster/spark { version = "2.4.3"; };
+  spark = callPackage ../applications/networking/cluster/spark { };
 
   spidermonkey_1_8_5 = callPackage ../development/interpreters/spidermonkey/1.8.5.nix { };
   spidermonkey_38 = callPackage ../development/interpreters/spidermonkey/38.nix ({
@@ -18504,6 +18503,8 @@ in
 
   fomp = callPackage ../applications/audio/fomp { };
 
+  formatter = callPackage ../applications/misc/formatter { };
+
   fractal = callPackage ../applications/networking/instant-messengers/fractal { };
 
   freecad = qt5.callPackage ../applications/graphics/freecad { mpi = openmpi; };
@@ -19665,13 +19666,18 @@ in
 
   multimon-ng = callPackage ../applications/radio/multimon-ng { };
 
-  inherit (callPackages ../applications/networking/mumble {
+  murmur = (libsForQt5.callPackage ../applications/networking/mumble {
+      avahi = avahi-compat;
+      pulseSupport = config.pulseaudio or false;
+      iceSupport = config.murmur.iceSupport or true;
+    }).murmur;
+
+  mumble = (libsForQt5.callPackage ../applications/networking/mumble {
       avahi = avahi-compat;
       jackSupport = config.mumble.jackSupport or false;
       speechdSupport = config.mumble.speechdSupport or false;
       pulseSupport = config.pulseaudio or false;
-      iceSupport = config.murmur.iceSupport or true;
-    }) mumble mumble_rc murmur murmur_rc;
+    }).mumble;
 
   mumble_overlay = callPackage ../applications/networking/mumble/overlay.nix {
     mumble_i686 = if stdenv.hostPlatform.system == "x86_64-linux"
@@ -22797,8 +22803,9 @@ in
     gsconnect = callPackage ../desktops/gnome-3/extensions/gsconnect { };
     icon-hider = callPackage ../desktops/gnome-3/extensions/icon-hider { };
     impatience = callPackage ../desktops/gnome-3/extensions/impatience.nix { };
-    nohotcorner = callPackage ../desktops/gnome-3/extensions/nohotcorner { };
+    mpris-indicator-button = callPackage ../desktops/gnome-3/extensions/mpris-indicator-button { };
     no-title-bar = callPackage ../desktops/gnome-3/extensions/no-title-bar { };
+    nohotcorner = callPackage ../desktops/gnome-3/extensions/nohotcorner { };
     pidgin-im-integration = callPackage ../desktops/gnome-3/extensions/pidgin-im-integration { };
     remove-dropdown-arrows = callPackage ../desktops/gnome-3/extensions/remove-dropdown-arrows { };
     sound-output-device-chooser = callPackage ../desktops/gnome-3/extensions/sound-output-device-chooser { };