NixOS · Dec 2, 2019 · Dec 9, 2019 · Dec 9, 2019 · Dec 9, 2019 · Dec 9, 2019
diff --git a/pkgs/applications/office/zim/default.nix b/pkgs/applications/office/zim/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, python3Packages, gtk3, gobject-introspection, wrapGAppsHook }:
+{ stdenv, fetchurl, python3Packages, gtk3, gobject-introspection, wrapGAppsHook, gnome3 }:
 
 #
 # TODO: Declare configuration options for the following optional dependencies:
@@ -16,7 +16,7 @@ python3Packages.buildPythonApplication rec {
     sha256 = "1n3gmg7g86s8iwcx0i7rvvfdfs1fzmc9awr9qzjd2rckw4bkxad1";
   };
 
-  buildInputs = [ gtk3 gobject-introspection wrapGAppsHook ];
+  buildInputs = [ gtk3 gobject-introspection wrapGAppsHook gnome3.adwaita-icon-theme ];
   propagatedBuildInputs = with python3Packages; [ pyxdg pygobject3 ];
 
 

diff --git a/pkgs/development/python-modules/Rtree/default.nix b/pkgs/development/python-modules/Rtree/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "Rtree";
-  version = "0.8.3";
+  version = "0.9.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0jc62jbcqqpjcwcly7l9zk25bg72mrxmjykpvfiscgln00qczfbc";
+    sha256 = "140j1vsbcj6sivq1b6pgkwm0czivx2x3d66mqq0d9ymg46njrzn9";
   };
 
   propagatedBuildInputs = [ libspatialindex ];

diff --git a/pkgs/development/python-modules/Wand/default.nix b/pkgs/development/python-modules/Wand/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "Wand";
-  version = "0.5.7";
+  version = "0.5.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0wvqzppflph3fkgkyv3k11ga28fv1g1bz8sbf227d7pql8c6ia8k";
+    sha256 = "0sjdlfhw1wdjqpmr72mckf2njy9xigx51shl510jhvl418cja2bd";
   };
 
   postPatch = ''

diff --git a/pkgs/development/python-modules/astropy-healpix/default.nix b/pkgs/development/python-modules/astropy-healpix/default.nix
@@ -8,13 +8,13 @@
 
 buildPythonPackage rec {
   pname = "astropy-healpix";
-  version = "0.4";
+  version = "0.5";
 
   doCheck = false; # tests require pytest-astropy
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8c9709ac923759c92eca6d2e623e734d0f417eed40ba835b77d99dec09e51aa2";
+    sha256 = "1bfdq33mj6mwk5fkc6n23f9bc9z8j7kmvql3zchz4h58jskmvqas";
   };
 
   propagatedBuildInputs = [ numpy astropy astropy-helpers ];

diff --git a/pkgs/development/python-modules/funcy/default.nix b/pkgs/development/python-modules/funcy/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "funcy";
-  version = "1.13";
+  version = "1.14";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1hxii7g4fn301vr8wg53jc1jkvbjlbaz1fbpgpn4362xcwzk73wi";
+    sha256 = "1i55c5kjvkb3y2jqfnlx3iirrd512mxjdhjpm1l2xya6nk1q9vkm";
   };
 
   # No tests

diff --git a/pkgs/development/python-modules/nbdime/default.nix b/pkgs/development/python-modules/nbdime/default.nix
@@ -24,12 +24,12 @@
 
 buildPythonPackage rec {
   pname = "nbdime";
-  version = "1.0.7";
+  version = "1.1.0";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "28615cb92d59e0511026bac4c916f16dc15981bcad4ddc3f7fdd6a289ea01242";
+    sha256 = "0qfy7nmlg75vryvrlgd6p0rqrvcclq8n9kd0n4xv5959s9sjy0w0";
   };
 
   checkInputs = [

diff --git a/pkgs/development/python-modules/pomegranate/default.nix b/pkgs/development/python-modules/pomegranate/default.nix
@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "pomegranate";
-  version = "0.11.1";
+  version = "0.11.2";
 
   src = fetchFromGitHub {
     repo = pname;
     owner = "jmschrei";
     rev = "v${version}";
-    sha256 = "19kdzqyj86aldsls68a6ymrs8sasv3a8r4wjmfdmcif1xsg6zb4q";
+    sha256 = "070ciwww1lhjmfwd5n1kcwgxwbgdfvmhjs4l156bnf08z9dlrafl";
   };
 
   propagatedBuildInputs = [ numpy scipy cython networkx joblib pyyaml ];

diff --git a/pkgs/development/python-modules/pyftdi/default.nix b/pkgs/development/python-modules/pyftdi/default.nix
@@ -8,12 +8,12 @@
 
 buildPythonPackage rec {
   pname = "pyftdi";
-  version = "0.30.3";
+  version = "0.42.2";
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ed55f0cb2d2f84b6e97be9583d582480ba9777cb0179aac0bb0ac480cd6760f5";
+    sha256 = "1bpb2rq7bc3p4g9qrfp4a7qcic79cvv1wh17j231bnpmy48njhvj";
   };
 
   propagatedBuildInputs = [ pyusb pyserial ];

diff --git a/pkgs/development/python-modules/pymupdf/default.nix b/pkgs/development/python-modules/pymupdf/default.nix
@@ -1,11 +1,11 @@
 { stdenv, buildPythonPackage, fetchPypi, mupdf, swig }:
 buildPythonPackage rec {
   pname = "PyMuPDF";
-  version = "1.16.8";
+  version = "1.16.9";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3099b48a796885c0760d8ac5439131dee1bc6adadf7ae008417e0ca8d8fcdf15";
+    sha256 = "09h960ns42bbrv10bg99fad193yvg64snhw8x7d78wg3qqvnnicc";
   };
 
   patchPhase = ''

diff --git a/pkgs/misc/screensavers/xlockmore/default.nix b/pkgs/misc/screensavers/xlockmore/default.nix
@@ -2,11 +2,11 @@
 , libXdmcp, libXt }:
 
 stdenv.mkDerivation rec {
-  name = "xlockmore-5.59";
+  name = "xlockmore-5.60";
 
   src = fetchurl {
     url = "http://sillycycle.com/xlock/${name}.tar.xz";
-    sha256 = "0lajc5a4lki33b9mzfsi74q4hbivbmhwysp7mib4ivnyxianhaid";
+    sha256 = "16v7y9g42a4g2dlhj5qfcax9ydg814zfxb8c9yj69c6kl51xdh79";
     curlOpts = "--user-agent 'Mozilla/5.0'";
   };
 

diff --git a/pkgs/tools/graphics/vips/default.nix b/pkgs/tools/graphics/vips/default.nix
@@ -10,13 +10,13 @@
 
 stdenv.mkDerivation rec {
   pname = "vips";
-  version = "8.8.3";
+  version = "8.8.4";
 
   src = fetchFromGitHub {
     owner = "libvips";
     repo = "libvips";
     rev = "v${version}";
-    sha256 = "0wlwcgcp7d3vhjdbi3xlpvnj4jl4321vac9v1sr1mis4aivwzsrn";
+    sha256 = "1gw8srjf5r6dhg6g5hh91if302mcr44dzy87mv230ar7027kwwbi";
     # Remove unicode file names which leads to different checksums on HFS+
     # vs. other filesystems because of unicode normalisation.
     extraPostFetch = ''