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python3.pkgs.rpy2: 2.9.5 -> 3.2.2 #74537

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merged 1 commit into from
Nov 30, 2019
Merged

python3.pkgs.rpy2: 2.9.5 -> 3.2.2 #74537

merged 1 commit into from
Nov 30, 2019
+155 −34

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timokau
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@timokau timokau commented Nov 28, 2019

Motivation for this change

There have been significant changes, therefore it doesn't make sense
anymore to maintain the python2 and python3 version in the same file.
We'll be able to drop the python2 version soon, some time after we have
switched sage to python3.

Things done
  • Tested using sandboxing (nix.useSandbox on NixOS, or option sandbox in nix.conf on non-NixOS linux)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nix-review --run "nix-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Determined the impact on package closure size (by running nix path-info -S before and after)
  • Ensured that relevant documentation is up to date
  • Fits CONTRIBUTING.md.
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@ofborg ofborg bot requested a review from joelmo November 28, 2019 22:16
@jonringer
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I would to split out the changes into 2 commits:

python2Packages.rpy2: freeze at 2.9.5
python3Packages.rpy2: 2.9.5 -> 3.2.2

@timokau
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timokau commented Nov 29, 2019

But python2 rpy2 was already frozen at 2.8.6. The only difference is that previously, both versions were maintained in the same file because 2.9.x (the py3 version) was similar enough.

jonringer
jonringer reviewed Nov 30, 2019
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this does seem to cause a regression with sage:

builder for '/nix/store/ss4rkx5p5aciz5nidlrzr088y00951br-sage-tests-8.9.drv' failed with exit code 1; last 10 log lines:
  sage -t --long /nix/store/62xwy4d6055qshylxl7n63idga66d96b-sage-src-8.9/src/sage/schemes/elliptic_curves/ell_rational_field.py
      [847 tests, 132.16 s]
  sage -t --long /nix/store/62xwy4d6055qshylxl7n63idga66d96b-sage-src-8.9/src/sage/rings/function_field/function_field.py
      [750 tests, 211.04 s]
  ----------------------------------------------------------------------
  sage -t --long /nix/store/62xwy4d6055qshylxl7n63idga66d96b-sage-src-8.9/src/sage/matrix/matrix_space.py  # 1 doctest failed
  ----------------------------------------------------------------------
  Total time for all tests: 652.0 seconds
      cpu time: 10508.3 seconds
      cumulative wall time: 13614.3 seconds
cannot build derivation '/nix/store/4i6b3xy9yh0frl6zakibjm83wxz7l2iz-sage-8.9.drv': 1 dependencies couldn't be built

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timokau commented Nov 30, 2019

@jonringer I cannot reproduce that. Neither on this branch, nor on master. This PR really shouldn't change anything for sage, since sage uses the py2 version which is still pinned on the same version.

The full log would be interesting. Is the failure reproducible for you?

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timokau commented Nov 30, 2019

You can run just that one test like this:

nix-build -E 'with (import ./. {}); sage.tests.override { files = [ "src/sage/matrix/matrix_space.py" ];}'

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I was also running a few other reviews, and it looks like it failed on a performance test. Could have been starved for cpu resources.

If you feel confident it will pass on hydra, then I'm fine with it

@timokau
python3.pkgs.rpy2: 2.9.5 -> 3.2.2
ef43cd3 
There have been significant changes, therefore it doesn't make sense
anymore to maintain the python2 and python3 version in the same file.
We'll be able to drop the python2 version soon, some time after we have
switched sage to python3.
@timokau timokau merged commit 28cb34d into NixOS:master Nov 30, 2019
@timokau timokau deleted the rpy2-3.2.2 branch November 30, 2019 23:38
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@Mic92 Mic92

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