python3Packages.astropy: unbreak #107770

rmcgibbo · 2020-12-28T00:29:53Z

Motivation for this change

Unbreak package. It appears to have been broken since it was upgraded from 4.0.3 -> 4.2 in 656348a https://hydra.nixos.org/build/133689349

I ran into a bit of difficulty.
(a) a separate helper library (https://github.com/astropy/extension-helpers) is necessary for installation, which appears to be totally different than the other astropy helper library we already have (https://github.com/astropy/astropy-helpers). I'm not sure if astropy-helpers is necessary anymore?
(b) I kept getting an inscrutable permission error with astropy-extension-helpers, which I've worked around with a patch.
(c) A number of packages appear to not build because they require older versions of astropy or their tests fail against this version of astropy, I'm not sure.

Things done

On NixOS 86_64:

[mcgibbon@pn50:~/projects/nixpkgs]$ nixpkgs-review rev aaf580220588d8a83ef1aee7fe04c1e4bb43c46c
$ git -c fetch.prune=false fetch --force https://github.com/NixOS/nixpkgs master:refs/nixpkgs-review/0
remote: Enumerating objects: 150, done.
remote: Counting objects: 100% (101/101), done.
remote: Compressing objects: 100% (24/24), done.
remote: Total 50 (delta 39), reused 32 (delta 24), pack-reused 0
Unpacking objects: 100% (50/50), 7.73 KiB | 304.00 KiB/s, done.
From https://github.com/NixOS/nixpkgs
   69a194eafe0..15b4f7e06c5  master     -> refs/nixpkgs-review/0
$ git worktree add /home/mcgibbon/.cache/nixpkgs-review/rev-aaf580220588d8a83ef1aee7fe04c1e4bb43c46c/nixpkgs 15b4f7e06c501bf849bc38ebd31348d617c44cd6
Preparing worktree (detached HEAD 15b4f7e06c5)
HEAD is now at 15b4f7e06c5 Merge pull request #107711 from r-ryantm/auto-update/iosevka-bin
$ nix-env -f /home/mcgibbon/.cache/nixpkgs-review/rev-aaf580220588d8a83ef1aee7fe04c1e4bb43c46c/nixpkgs -qaP --xml --out-path --show-trace
$ git merge --no-commit aaf580220588d8a83ef1aee7fe04c1e4bb43c46c
Auto-merging pkgs/top-level/python-packages.nix
Automatic merge went well; stopped before committing as requested
$ nix-env -f /home/mcgibbon/.cache/nixpkgs-review/rev-aaf580220588d8a83ef1aee7fe04c1e4bb43c46c/nixpkgs -qaP --xml --out-path --show-trace --meta
6 packages added:
python37Packages.astropy-extension-helpers (init at 0.1) python37Packages.pyerfa (init at 1.7.1.1) python38Packages.astropy-extension-helpers (init at 0.1) python38Packages.pyerfa (init at 1.7.1.1) python39Packages.astropy-extension-helpers (init at 0.1) python39Packages.pyerfa (init at 1.7.1.1)

35 packages updated:
python3.7-aplpy python3.7-asdf python3.7-astropy python3.7-astropy-healpix python3.7-astroquery python3.7-pyavm python3.7-pyregion python3.7-pytest-astropy python3.7-pytest-astropy-header python3.7-radio_beam python3.7-reproject python3.7-spectral-cube python3.7-sunpy python3.8-aplpy python3.8-asdf python3.8-astropy python3.8-astropy-healpix python3.8-astroquery python3.8-pyavm python3.8-pyregion python3.8-pytest-astropy python3.8-pytest-astropy-header python3.8-radio_beam python3.8-reproject python3.8-spectral-cube python3.8-sunpy python3.9-asdf python3.9-astropy python3.9-astropy-healpix python3.9-pyavm python3.9-pyregion python3.9-pytest-astropy python3.9-pytest-astropy-header python3.9-radio_beam python3.9-reproject

$ nix --experimental-features nix-command build --no-link --keep-going --option build-use-sandbox relaxed -f /home/mcgibbon/.cache/nixpkgs-review/rev-aaf580220588d8a83ef1aee7fe04c1e4bb43c46c/build.nix
builder for '/nix/store/6wvg0hnlvfp7ix58c4264xalddrkmi71-python3.7-drms-0.6.0.drv' failed with exit code 1; last 10 log lines:
  strip:/nix/store/3330pw7r2mgdgk7cf8rphps1l2gbfxai-python3.7-drms-0.6.0/lib/python3.7/site-packages/drms-0.6.0.dist-info/top_level.txt: file format not recognized
  strip:/nix/store/3330pw7r2mgdgk7cf8rphps1l2gbfxai-python3.7-drms-0.6.0/bin/drms: file format not recognized
  patching script interpreter paths in /nix/store/3330pw7r2mgdgk7cf8rphps1l2gbfxai-python3.7-drms-0.6.0
  checking for references to /build/ in /nix/store/3330pw7r2mgdgk7cf8rphps1l2gbfxai-python3.7-drms-0.6.0...
  Rewriting #!/nix/store/401hv5vy6jm6wyppmlaalakdlsrzchc6-python3-3.7.9/bin/python3.7 to #!/nix/store/401hv5vy6jm6wyppmlaalakdlsrzchc6-python3-3.7.9
  wrapping `/nix/store/3330pw7r2mgdgk7cf8rphps1l2gbfxai-python3.7-drms-0.6.0/bin/drms'...
  Executing pythonRemoveTestsDir
  Finished executing pythonRemoveTestsDir
  running install tests
  /nix/store/401hv5vy6jm6wyppmlaalakdlsrzchc6-python3-3.7.9/bin/python3.7: No module named drms.tests.__main__; 'drms.tests' is a package and cannot be directly executed
builder for '/nix/store/m97q1k1w14mp473y22ifz4jxq0d6wxf9-python3.8-drms-0.6.0.drv' failed with exit code 1; last 10 log lines:
  strip:/nix/store/il5ik2rijkgf05899xdv5m7429195k2q-python3.8-drms-0.6.0/lib/python3.8/site-packages/drms-0.6.0.dist-info/top_level.txt: file format not recognized
  strip:/nix/store/il5ik2rijkgf05899xdv5m7429195k2q-python3.8-drms-0.6.0/bin/drms: file format not recognized
  patching script interpreter paths in /nix/store/il5ik2rijkgf05899xdv5m7429195k2q-python3.8-drms-0.6.0
  checking for references to /build/ in /nix/store/il5ik2rijkgf05899xdv5m7429195k2q-python3.8-drms-0.6.0...
  Rewriting #!/nix/store/m7080pw0ryjk0jhljp55rq1hd2qy8gki-python3-3.8.6/bin/python3.8 to #!/nix/store/m7080pw0ryjk0jhljp55rq1hd2qy8gki-python3-3.8.6
  wrapping `/nix/store/il5ik2rijkgf05899xdv5m7429195k2q-python3.8-drms-0.6.0/bin/drms'...
  Executing pythonRemoveTestsDir
  Finished executing pythonRemoveTestsDir
  running install tests
  /nix/store/m7080pw0ryjk0jhljp55rq1hd2qy8gki-python3-3.8.6/bin/python3.8: No module named drms.tests.__main__; 'drms.tests' is a package and cannot be directly executed
builder for '/nix/store/w5llnbgbf0d1v43m69drqwi6nj08rv7z-python3.9-pytest-astropy-header-0.1.2.drv' failed with exit code 1; last 10 log lines:
  FAILED tests/test_display.py::test_override_package_multiple[cli] - Assertion...
  FAILED tests/test_display.py::test_override_package_multiple[ini] - Assertion...
  FAILED tests/test_display.py::test_override_package_multiple[ini_list] - Asse...
  FAILED tests/test_display.py::test_override_package_multiple[conftest] - Asse...
  FAILED tests/test_display.py::test_nonexistent[cli] - AssertionError: assert ...
  FAILED tests/test_display.py::test_nonexistent[ini] - AssertionError: assert ...
  FAILED tests/test_display.py::test_nonexistent[ini_list] - AssertionError: as...
  FAILED tests/test_display.py::test_nonexistent[conftest] - AssertionError: as...
  FAILED tests/test_display.py::test_modify_in_conftest - AssertionError: asser...
  ========================= 16 failed, 3 passed in 1.18s =========================
cannot build derivation '/nix/store/7qf7g5kcancyc0ykr0z1q2xli4ypf4i5-python3.9-pytest-astropy-0.8.0.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/i4kjsjirhp78l0np3xm2d7vh3idz7kss-python3.9-asdf-2.7.1.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/blpqqxzsymcl1vjcvshn216ddsn86a5z-python3.9-pyregion-2.0.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/ldxc8fs4wspvb83a8k926n7imq02xz28-python3.9-radio_beam-0.3.2.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/mmhrcpqydfd45qhrasbxyyp9cybmfdwj-python3.9-reproject-0.7.1.drv': 1 dependencies couldn't be built
builder for '/nix/store/gsmj7z0bkijd7m9qlzs0460zb50qk2mp-python3.7-astroquery-0.4.1.drv' failed with exit code 1; last 10 log lines:
  /build/astroquery-0.4.1/dist /build/astroquery-0.4.1
  Processing ./astroquery-0.4.1-py3-none-any.whl
  Requirement already satisfied: beautifulsoup4>=4.3.2 in /nix/store/g4sas5amlaywrdhm42pygmb8i3j0sajd-python3.7-beautifulsoup4-4.9.3/lib/python3.7/site-packages (from astroquery==0.4.1) (4.9.3)
  Requirement already satisfied: html5lib>=0.999 in /nix/store/y9vkjin95kx24hvdfmvsyzp9kb0wlpwf-python3.7-html5lib-1.1/lib/python3.7/site-packages (from astroquery==0.4.1) (1.1)
  Requirement already satisfied: requests>=2.4.3 in /nix/store/2fjhycxmvz8mzzf58hhdscx9fhrwfbz1-python3.7-requests-2.25.0/lib/python3.7/site-packages (from astroquery==0.4.1) (2.25.0)
  Requirement already satisfied: keyring>=4.0 in /nix/store/rgc33d7i0qsyvxjh2bbm1scrxb6fkrbs-python3.7-keyring-21.5.0/lib/python3.7/site-packages (from astroquery==0.4.1) (21.5.0)
  Requirement already satisfied: six in /nix/store/5zprj4zn0wykp3h8rxx6cji9gp9klmhi-python3.7-six-1.15.0/lib/python3.7/site-packages (from astroquery==0.4.1) (1.15.0)
  Requirement already satisfied: numpy in /nix/store/d11xr07j2vvw5kyi54kvj7rsj86lasdy-python3.7-numpy-1.19.4/lib/python3.7/site-packages (from astroquery==0.4.1) (1.19.4)
  ERROR: Could not find a version that satisfies the requirement astropy>=3.1 (from astroquery)
  ERROR: No matching distribution found for astropy>=3.1
builder for '/nix/store/m56fdydyqs1589nipvns7ms8b2vzbzzj-python3.8-astroquery-0.4.1.drv' failed with exit code 1; last 10 log lines:
  /build/astroquery-0.4.1/dist /build/astroquery-0.4.1
  Processing ./astroquery-0.4.1-py3-none-any.whl
  Requirement already satisfied: html5lib>=0.999 in /nix/store/1iidnp3izpwx09qf903r6h7mxn4yl0sj-python3.8-html5lib-1.1/lib/python3.8/site-packages (from astroquery==0.4.1) (1.1)
  Requirement already satisfied: keyring>=4.0 in /nix/store/a4vz22d4iyzqf8mqdl3srqmipifcfdyv-python3.8-keyring-21.5.0/lib/python3.8/site-packages (from astroquery==0.4.1) (21.5.0)
  Requirement already satisfied: requests>=2.4.3 in /nix/store/xqms8zgg4zmp00mdglbncncpaynmp3xb-python3.8-requests-2.25.0/lib/python3.8/site-packages (from astroquery==0.4.1) (2.25.0)
  Requirement already satisfied: beautifulsoup4>=4.3.2 in /nix/store/fdw37x9q275172g7ag2gkp9yfzr6f2ym-python3.8-beautifulsoup4-4.9.3/lib/python3.8/site-packages (from astroquery==0.4.1) (4.9.3)
  Requirement already satisfied: six in /nix/store/dyipdczm6dvg6m0jchcypv2x7nqzgcrm-python3.8-six-1.15.0/lib/python3.8/site-packages (from astroquery==0.4.1) (1.15.0)
  Requirement already satisfied: numpy in /nix/store/vzx1j0846qda14bzrvc2rdff2gd1fs5w-python3.8-numpy-1.19.4/lib/python3.8/site-packages (from astroquery==0.4.1) (1.19.4)
  ERROR: Could not find a version that satisfies the requirement astropy>=3.1 (from astroquery)
  ERROR: No matching distribution found for astropy>=3.1
builder for '/nix/store/vni6s9fh502rlsk4lwgg7s0a1ibwllyl-python3.7-pytest-astropy-header-0.1.2.drv' failed with exit code 1; last 10 log lines:
  FAILED tests/test_display.py::test_override_package_multiple[cli] - Assertion...
  FAILED tests/test_display.py::test_override_package_multiple[ini] - Assertion...
  FAILED tests/test_display.py::test_override_package_multiple[ini_list] - Asse...
  FAILED tests/test_display.py::test_override_package_multiple[conftest] - Asse...
  FAILED tests/test_display.py::test_nonexistent[cli] - AssertionError: assert ...
  FAILED tests/test_display.py::test_nonexistent[ini] - AssertionError: assert ...
  FAILED tests/test_display.py::test_nonexistent[ini_list] - AssertionError: as...
  FAILED tests/test_display.py::test_nonexistent[conftest] - AssertionError: as...
  FAILED tests/test_display.py::test_modify_in_conftest - AssertionError: asser...
  ========================= 16 failed, 3 passed in 1.34s =========================
cannot build derivation '/nix/store/54md5nshx1x9zkvjx9r5gg62rndy710b-python3.7-pytest-astropy-0.8.0.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/v988m5am4i1q9dq0ih3nw76yj28az5q9-python3.7-asdf-2.7.1.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/4azldr31f5h2l4rii7p016wqkcx685r7-python3.7-pyregion-2.0.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/9bp1zqksny329s39xj5kswrr69yby748-python3.7-radio_beam-0.3.2.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/3m23appm45b38g9p9hzbnhzwhbymrcln-python3.7-sunpy-1.0.6.drv': 3 dependencies couldn't be built
cannot build derivation '/nix/store/fqh63yvd21rw75gbkm9g3ymjf9i6crh8-python3.7-reproject-0.7.1.drv': 1 dependencies couldn't be built
builder for '/nix/store/w99ggid30v72qgfj42g040474ilwi1aw-python3.8-pytest-astropy-header-0.1.2.drv' failed with exit code 1; last 10 log lines:
  FAILED tests/test_display.py::test_override_package_multiple[cli] - Assertion...
  FAILED tests/test_display.py::test_override_package_multiple[ini] - Assertion...
  FAILED tests/test_display.py::test_override_package_multiple[ini_list] - Asse...
  FAILED tests/test_display.py::test_override_package_multiple[conftest] - Asse...
  FAILED tests/test_display.py::test_nonexistent[cli] - AssertionError: assert ...
  FAILED tests/test_display.py::test_nonexistent[ini] - AssertionError: assert ...
  FAILED tests/test_display.py::test_nonexistent[ini_list] - AssertionError: as...
  FAILED tests/test_display.py::test_nonexistent[conftest] - AssertionError: as...
  FAILED tests/test_display.py::test_modify_in_conftest - AssertionError: asser...
  ========================= 16 failed, 3 passed in 1.25s =========================
cannot build derivation '/nix/store/xa1x7abdg8vixmn3gb7xd4v71fycy3h2-python3.8-pytest-astropy-0.8.0.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/nnvzdl6r5lrrdj9hn6sm6bp7p5s7dabs-python3.8-asdf-2.7.1.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/ivzzc8gmpdgx639wygrna2j5yq4bi1h5-python3.8-pyregion-2.0.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/0rca4lpvmiklhll5xwv77q53w7v85w2m-python3.8-radio_beam-0.3.2.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/szh1ywi3lz5fhp8iypv039qx43krrz4l-python3.8-sunpy-1.0.6.drv': 3 dependencies couldn't be built
cannot build derivation '/nix/store/xl1cqjmdh10s9dprvnxdm7br48v24k71-python3.8-reproject-0.7.1.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/7dvid9pzbk9681nhdcwabnx9l181aa70-python3.7-aplpy-2.0.3.drv': 3 dependencies couldn't be built
cannot build derivation '/nix/store/3vb920kdfp1p1lx42bnzxiw0al3biyd6-python3.7-spectral-cube-0.4.5.drv': 3 dependencies couldn't be built
cannot build derivation '/nix/store/8ssh4vq0jqgcjv11qjk0akg20i3x6vif-python3.8-aplpy-2.0.3.drv': 3 dependencies couldn't be built
cannot build derivation '/nix/store/w3ns3z70qydpfwg7bb721qlri6212xz9-python3.8-spectral-cube-0.4.5.drv': 3 dependencies couldn't be built
cannot build derivation '/nix/store/mr4rv24a0ivjjxn9gjiq11flpmsygcnm-env.drv': 26 dependencies couldn't be built
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build of '/nix/store/mr4rv24a0ivjjxn9gjiq11flpmsygcnm-env.drv' failed
26 packages failed to build:
python37Packages.aplpy python37Packages.asdf python37Packages.astroquery python37Packages.pyregion python37Packages.pytest-astropy python37Packages.pytest-astropy-header python37Packages.radio_beam python37Packages.reproject python37Packages.spectral-cube python37Packages.sunpy python38Packages.aplpy python38Packages.asdf python38Packages.astroquery python38Packages.pyregion python38Packages.pytest-astropy python38Packages.pytest-astropy-header python38Packages.radio_beam python38Packages.reproject python38Packages.spectral-cube python38Packages.sunpy python39Packages.asdf python39Packages.pyregion python39Packages.pytest-astropy python39Packages.pytest-astropy-header python39Packages.radio_beam python39Packages.reproject

15 packages built:
python37Packages.astropy python37Packages.astropy-extension-helpers python37Packages.astropy-healpix python37Packages.pyavm python37Packages.pyerfa python38Packages.astropy python38Packages.astropy-extension-helpers python38Packages.astropy-healpix python38Packages.pyavm python38Packages.pyerfa python39Packages.astropy python39Packages.astropy-extension-helpers python39Packages.astropy-healpix python39Packages.pyavm python39Packages.pyerfa

error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/7dvid9pzbk9681nhdcwabnx9l181aa70-python3.7-aplpy-2.0.3.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/v988m5am4i1q9dq0ih3nw76yj28az5q9-python3.7-asdf-2.7.1.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/4azldr31f5h2l4rii7p016wqkcx685r7-python3.7-pyregion-2.0.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/54md5nshx1x9zkvjx9r5gg62rndy710b-python3.7-pytest-astropy-0.8.0.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/9bp1zqksny329s39xj5kswrr69yby748-python3.7-radio_beam-0.3.2.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/fqh63yvd21rw75gbkm9g3ymjf9i6crh8-python3.7-reproject-0.7.1.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/3vb920kdfp1p1lx42bnzxiw0al3biyd6-python3.7-spectral-cube-0.4.5.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/3m23appm45b38g9p9hzbnhzwhbymrcln-python3.7-sunpy-1.0.6.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/8ssh4vq0jqgcjv11qjk0akg20i3x6vif-python3.8-aplpy-2.0.3.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/nnvzdl6r5lrrdj9hn6sm6bp7p5s7dabs-python3.8-asdf-2.7.1.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/ivzzc8gmpdgx639wygrna2j5yq4bi1h5-python3.8-pyregion-2.0.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/xa1x7abdg8vixmn3gb7xd4v71fycy3h2-python3.8-pytest-astropy-0.8.0.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/0rca4lpvmiklhll5xwv77q53w7v85w2m-python3.8-radio_beam-0.3.2.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/xl1cqjmdh10s9dprvnxdm7br48v24k71-python3.8-reproject-0.7.1.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/w3ns3z70qydpfwg7bb721qlri6212xz9-python3.8-spectral-cube-0.4.5.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/szh1ywi3lz5fhp8iypv039qx43krrz4l-python3.8-sunpy-1.0.6.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/i4kjsjirhp78l0np3xm2d7vh3idz7kss-python3.9-asdf-2.7.1.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/blpqqxzsymcl1vjcvshn216ddsn86a5z-python3.9-pyregion-2.0.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/7qf7g5kcancyc0ykr0z1q2xli4ypf4i5-python3.9-pytest-astropy-0.8.0.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/ldxc8fs4wspvb83a8k926n7imq02xz28-python3.9-radio_beam-0.3.2.drv' is not available
error: --- Error ----------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/mmhrcpqydfd45qhrasbxyyp9cybmfdwj-python3.9-reproject-0.7.1.drv' is not available
$ nix-shell /home/mcgibbon/.cache/nixpkgs-review/rev-aaf580220588d8a83ef1aee7fe04c1e4bb43c46c/shell.nix

rmcgibbo · 2020-12-28T00:49:39Z

Result of nixpkgs-review on x86_64 darwin:

$ nixpkgs-review rev aaf580220588d8a83ef1aee7fe04c1e4bb43c46c
$ git -c fetch.prune=false fetch --force https://github.com/NixOS/nixpkgs master:refs/nixpkgs-review/0
remote: Enumerating objects: 408, done.
remote: Counting objects: 100% (408/408), done.
remote: Compressing objects: 100% (53/53), done.
remote: Total 539 (delta 374), reused 374 (delta 355), pack-reused 131
Receiving objects: 100% (539/539), 551.50 KiB | 9.85 MiB/s, done.
Resolving deltas: 100% (382/382), completed with 183 local objects.
From https://github.com/NixOS/nixpkgs
 * [new branch]              master     -> refs/nixpkgs-review/0
$ git worktree add /Users/mcgibbon/.cache/nixpkgs-review/rev-aaf580220588d8a83ef1aee7fe04c1e4bb43c46c/nixpkgs 15b4f7e06c501bf849bc38ebd31348d617c44cd6
Preparing worktree (detached HEAD 15b4f7e06c5)
Updating files: 100% (23586/23586), done.
HEAD is now at 15b4f7e06c5 Merge pull request #107711 from r-ryantm/auto-update/iosevka-bin
$ nix-env -f /Users/mcgibbon/.cache/nixpkgs-review/rev-aaf580220588d8a83ef1aee7fe04c1e4bb43c46c/nixpkgs -qaP --xml --out-path --show-trace
$ git merge --no-commit aaf580220588d8a83ef1aee7fe04c1e4bb43c46c
Auto-merging pkgs/top-level/python-packages.nix
Automatic merge went well; stopped before committing as requested
$ nix-env -f /Users/mcgibbon/.cache/nixpkgs-review/rev-aaf580220588d8a83ef1aee7fe04c1e4bb43c46c/nixpkgs -qaP --xml --out-path --show-trace --meta
6 packages added:
python37Packages.astropy-extension-helpers (init at 0.1) python37Packages.pyerfa (init at 1.7.1.1) python38Packages.astropy-extension-helpers (init at 0.1) python38Packages.pyerfa (init at 1.7.1.1) python39Packages.astropy-extension-helpers (init at 0.1) python39Packages.pyerfa (init at 1.7.1.1)

36 packages updated:
python3.7-aplpy python3.7-asdf python3.7-astropy python3.7-astropy-healpix python3.7-astroquery python3.7-pyavm python3.7-pyregion python3.7-pytest-astropy python3.7-pytest-astropy-header python3.7-radio_beam python3.7-reproject python3.7-spectral-cube python3.7-sunpy python3.8-aplpy python3.8-asdf python3.8-astropy python3.8-astropy-healpix python3.8-astroquery python3.8-pyavm python3.8-pyregion python3.8-pytest-astropy python3.8-pytest-astropy-header python3.8-radio_beam python3.8-reproject python3.8-spectral-cube python3.8-sunpy python3.9-asdf python3.9-astropy python3.9-astropy-healpix python3.9-astroquery python3.9-pyavm python3.9-pyregion python3.9-pytest-astropy python3.9-pytest-astropy-header python3.9-radio_beam python3.9-reproject

$ nix --experimental-features nix-command build --no-link --keep-going --option build-use-sandbox relaxed -f /Users/mcgibbon/.cache/nixpkgs-review/rev-aaf580220588d8a83ef1aee7fe04c1e4bb43c46c/build.nix
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
builder for '/nix/store/hzxypnwgjbsz0k0a657ypm68cvyaxaj7-python3.7-Shapely-1.7.1.drv' failed with exit code 4; last 10 log lines:
  Finished executing pythonRemoveTestsDir
  running install tests
  ImportError while loading conftest '/private/tmp/nix-build-python3.7-Shapely-1.7.1.drv-0/Shapely-1.7.1/tests/conftest.py'.
  tests/__init__.py:4: in <module>
      from shapely.geos import geos_version_string, lgeos, WKTWriter
  /nix/store/xx19g23qsfv0b446x3d49lfbdkj8c7w2-python3.7-Shapely-1.7.1/lib/python3.7/site-packages/shapely/geos.py:65: in <module>
      free = CDLL('/nix/store/r913a0b23i21r8y4x8kgx024gms9lvx9-Libsystem-osx-10.12.6/lib/libc.dylib').free
  /nix/store/3sasd2yg0np2wpbkxz84sp7bhw02grvh-python3-3.7.9/lib/python3.7/ctypes/__init__.py:364: in __init__
      self._handle = _dlopen(self._name, mode)
  E   OSError: dlopen(/nix/store/r913a0b23i21r8y4x8kgx024gms9lvx9-Libsystem-osx-10.12.6/lib/libc.dylib, 6): image not found
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
builder for '/nix/store/f3rgvqlh3mbs5a2rrk9vi0i744m07hh5-python3.7-drms-0.6.0.drv' failed with exit code 1; last 10 log lines:
  strip: can't process non-object and non-archive file: /nix/store/sh50sjj6fijqyz3gk5763d56xprvgxhx-python3.7-drms-0.6.0/lib/python3.7/site-packages/drms-0.6.0.dist-info/top_level.txt
  strip: can't process non-object and non-archive file: /nix/store/sh50sjj6fijqyz3gk5763d56xprvgxhx-python3.7-drms-0.6.0/lib/python3.7/site-packages/drms-0.6.0.dist-info/WHEEL
  strip: can't process non-object and non-archive file: /nix/store/sh50sjj6fijqyz3gk5763d56xprvgxhx-python3.7-drms-0.6.0/bin/drms
  patching script interpreter paths in /nix/store/sh50sjj6fijqyz3gk5763d56xprvgxhx-python3.7-drms-0.6.0
  Rewriting #!/nix/store/3sasd2yg0np2wpbkxz84sp7bhw02grvh-python3-3.7.9/bin/python3.7 to #!/nix/store/3sasd2yg0np2wpbkxz84sp7bhw02grvh-python3-3.7.9
  wrapping `/nix/store/sh50sjj6fijqyz3gk5763d56xprvgxhx-python3.7-drms-0.6.0/bin/drms'...
  Executing pythonRemoveTestsDir
  Finished executing pythonRemoveTestsDir
  running install tests
  /nix/store/3sasd2yg0np2wpbkxz84sp7bhw02grvh-python3-3.7.9/bin/python3.7: No module named drms.tests.__main__; 'drms.tests' is a package and cannot be directly executed
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
builder for '/nix/store/p01r23zxph6pw5hghmikj8vsflsz7l6a-python3.8-Shapely-1.7.1.drv' failed with exit code 4; last 10 log lines:
  Finished executing pythonRemoveTestsDir
  running install tests
  ImportError while loading conftest '/private/tmp/nix-build-python3.8-Shapely-1.7.1.drv-0/Shapely-1.7.1/tests/conftest.py'.
  tests/__init__.py:4: in <module>
      from shapely.geos import geos_version_string, lgeos, WKTWriter
  /nix/store/5bmxxxidjq5fg1azq0drc87rdswprw8d-python3.8-Shapely-1.7.1/lib/python3.8/site-packages/shapely/geos.py:65: in <module>
      free = CDLL('/nix/store/r913a0b23i21r8y4x8kgx024gms9lvx9-Libsystem-osx-10.12.6/lib/libc.dylib').free
  /nix/store/v3qi2n1cb9bj8h3076p3rz5fg0kpzz53-python3-3.8.6/lib/python3.8/ctypes/__init__.py:373: in __init__
      self._handle = _dlopen(self._name, mode)
  E   OSError: dlopen(/nix/store/r913a0b23i21r8y4x8kgx024gms9lvx9-Libsystem-osx-10.12.6/lib/libc.dylib, 6): image not found
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
builder for '/nix/store/pycfa2a3dzwf1z95z6vdx3f8faqrvfpf-python3.8-drms-0.6.0.drv' failed with exit code 1; last 10 log lines:
  strip: can't process non-object and non-archive file: /nix/store/fbrwk1nrbz2ydfrk1zvlf9a768bmar94-python3.8-drms-0.6.0/lib/python3.8/site-packages/drms-0.6.0.dist-info/top_level.txt
  strip: can't process non-object and non-archive file: /nix/store/fbrwk1nrbz2ydfrk1zvlf9a768bmar94-python3.8-drms-0.6.0/lib/python3.8/site-packages/drms-0.6.0.dist-info/WHEEL
  strip: can't process non-object and non-archive file: /nix/store/fbrwk1nrbz2ydfrk1zvlf9a768bmar94-python3.8-drms-0.6.0/bin/drms
  patching script interpreter paths in /nix/store/fbrwk1nrbz2ydfrk1zvlf9a768bmar94-python3.8-drms-0.6.0
  Rewriting #!/nix/store/v3qi2n1cb9bj8h3076p3rz5fg0kpzz53-python3-3.8.6/bin/python3.8 to #!/nix/store/v3qi2n1cb9bj8h3076p3rz5fg0kpzz53-python3-3.8.6
  wrapping `/nix/store/fbrwk1nrbz2ydfrk1zvlf9a768bmar94-python3.8-drms-0.6.0/bin/drms'...
  Executing pythonRemoveTestsDir
  Finished executing pythonRemoveTestsDir
  running install tests
  /nix/store/v3qi2n1cb9bj8h3076p3rz5fg0kpzz53-python3-3.8.6/bin/python3.8: No module named drms.tests.__main__; 'drms.tests' is a package and cannot be directly executed
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
builder for '/nix/store/ybyskbpzpqvgqykdwj4fx2nkih99ksb5-python3.7-astroquery-0.4.1.drv' failed with exit code 1; last 10 log lines:
  /private/tmp/nix-build-python3.7-astroquery-0.4.1.drv-0/astroquery-0.4.1/dist /private/tmp/nix-build-python3.7-astroquery-0.4.1.drv-0/astroquery-0.4.1
  Processing ./astroquery-0.4.1-py3-none-any.whl
  Requirement already satisfied: beautifulsoup4>=4.3.2 in /nix/store/09p41py3kbbcsvn34cx1w3psxig2diw0-python3.7-beautifulsoup4-4.9.3/lib/python3.7/site-packages (from astroquery==0.4.1) (4.9.3)
  Requirement already satisfied: numpy in /nix/store/xqqics42949sjq985zwkqc66hipl0652-python3.7-numpy-1.19.4/lib/python3.7/site-packages (from astroquery==0.4.1) (1.19.4)
  Requirement already satisfied: six in /nix/store/zps19xlw9bzr2kb7x9h26y72bz3xq146-python3.7-six-1.15.0/lib/python3.7/site-packages (from astroquery==0.4.1) (1.15.0)
  Requirement already satisfied: keyring>=4.0 in /nix/store/7aga2ln5y6lmm5gcmfpfkz7crf5cpzc5-python3.7-keyring-21.5.0/lib/python3.7/site-packages (from astroquery==0.4.1) (21.5.0)
  Requirement already satisfied: requests>=2.4.3 in /nix/store/9ks0ngbjxcm3cw12iswashcb162ifxi5-python3.7-requests-2.25.0/lib/python3.7/site-packages (from astroquery==0.4.1) (2.25.0)
  Requirement already satisfied: html5lib>=0.999 in /nix/store/nbzgjgjbbgy08i7ml2iwx0caww8z5id2-python3.7-html5lib-1.1/lib/python3.7/site-packages (from astroquery==0.4.1) (1.1)
  ERROR: Could not find a version that satisfies the requirement astropy>=3.1 (from astroquery)
  ERROR: No matching distribution found for astropy>=3.1
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
builder for '/nix/store/x4n73z4c4pqxkfriiyi7jqpw1vr0chf2-python3.7-pytest-astropy-header-0.1.2.drv' failed with exit code 1; last 10 log lines:
  FAILED tests/test_display.py::test_override_package_multiple[cli] - Assertion...
  FAILED tests/test_display.py::test_override_package_multiple[ini] - Assertion...
  FAILED tests/test_display.py::test_override_package_multiple[ini_list] - Asse...
  FAILED tests/test_display.py::test_override_package_multiple[conftest] - Asse...
  FAILED tests/test_display.py::test_nonexistent[cli] - AssertionError: assert ...
  FAILED tests/test_display.py::test_nonexistent[ini] - AssertionError: assert ...
  FAILED tests/test_display.py::test_nonexistent[ini_list] - AssertionError: as...
  FAILED tests/test_display.py::test_nonexistent[conftest] - AssertionError: as...
  FAILED tests/test_display.py::test_modify_in_conftest - AssertionError: asser...
  ========================= 16 failed, 3 passed in 2.07s =========================
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/b431kwjyhbm8xhx0a8r8r715m135r9g5-python3.7-pytest-astropy-0.8.0.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/mq2icysq7yyqlsy9bbn3ariwz04wa7hr-python3.7-asdf-2.7.1.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/wqsaw5dag00kvhqn0h9zraww9xl6dvbq-python3.7-pyregion-2.0.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/7inqpsxxdccjg53lig6d2p7sapah8ngd-python3.7-radio_beam-0.3.2.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/wy00s8aajpbrjjkj77lkjqfvjmj3h74n-python3.7-reproject-0.7.1.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
4 dependencies of derivation '/nix/store/pmr65j11wsnxhcr65vh0d32hmyks5pws-python3.7-aplpy-2.0.3.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
2 dependencies of derivation '/nix/store/rliyj37jz2nfxiz0jzi860lnd793qcpx-python3.7-sunpy-1.0.6.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
3 dependencies of derivation '/nix/store/33xzq88wi7pkdadqm3p4hqdyfrpgr68m-python3.7-spectral-cube-0.4.5.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
builder for '/nix/store/pqgbsjjqg98sg232ri0srcpw418iin4j-python3.8-astroquery-0.4.1.drv' failed with exit code 1; last 10 log lines:
  Executing pipInstallPhase
  /private/tmp/nix-build-python3.8-astroquery-0.4.1.drv-0/astroquery-0.4.1/dist /private/tmp/nix-build-python3.8-astroquery-0.4.1.drv-0/astroquery-0.4.1
  Processing ./astroquery-0.4.1-py3-none-any.whl
  Requirement already satisfied: six in /nix/store/rpmwa5c6jf8zjmqh46fcxc4l1zrjff0v-python3.8-six-1.15.0/lib/python3.8/site-packages (from astroquery==0.4.1) (1.15.0)
  Requirement already satisfied: html5lib>=0.999 in /nix/store/jzi6j09wnz2icck08hrfsi6wx9l33yn5-python3.8-html5lib-1.1/lib/python3.8/site-packages (from astroquery==0.4.1) (1.1)
  Requirement already satisfied: keyring>=4.0 in /nix/store/fiiah9lrmg2cxiamklmg05x527abidyr-python3.8-keyring-21.5.0/lib/python3.8/site-packages (from astroquery==0.4.1) (21.5.0)
  Requirement already satisfied: numpy in /nix/store/6rkgcj0i8rj4ym8bi309kq021aqmqk5m-python3.8-numpy-1.19.4/lib/python3.8/site-packages (from astroquery==0.4.1) (1.19.4)
  Requirement already satisfied: beautifulsoup4>=4.3.2 in /nix/store/pk3aam069d766akxxs5wfdralilyx0az-python3.8-beautifulsoup4-4.9.3/lib/python3.8/site-packages (from astroquery==0.4.1) (4.9.3)
  ERROR: Could not find a version that satisfies the requirement astropy>=3.1 (from astroquery)
  ERROR: No matching distribution found for astropy>=3.1
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
builder for '/nix/store/k596zs2addg03rar4qs4kipfmmkwzvi6-python3.8-pytest-astropy-header-0.1.2.drv' failed with exit code 1; last 10 log lines:
  FAILED tests/test_display.py::test_override_package_multiple[cli] - Assertion...
  FAILED tests/test_display.py::test_override_package_multiple[ini] - Assertion...
  FAILED tests/test_display.py::test_override_package_multiple[ini_list] - Asse...
  FAILED tests/test_display.py::test_override_package_multiple[conftest] - Asse...
  FAILED tests/test_display.py::test_nonexistent[cli] - AssertionError: assert ...
  FAILED tests/test_display.py::test_nonexistent[ini] - AssertionError: assert ...
  FAILED tests/test_display.py::test_nonexistent[ini_list] - AssertionError: as...
  FAILED tests/test_display.py::test_nonexistent[conftest] - AssertionError: as...
  FAILED tests/test_display.py::test_modify_in_conftest - AssertionError: asser...
  ========================= 16 failed, 3 passed in 2.04s =========================
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/rbjn96q67ly4k0qx1n9vhmzjsb4dcf9x-python3.8-pytest-astropy-0.8.0.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/wpns5jcs5171v3l5mlrajyvf7rybjy24-python3.8-asdf-2.7.1.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/n30rslas6v19ipiv1r8dizbyjp22irgw-python3.8-pyregion-2.0.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/5pw8s9dq68pccfmlln5361liyh840khv-python3.8-radio_beam-0.3.2.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/hl7wkp9dzmz9dk0ln3nkkxsl15s5vp7l-python3.8-reproject-0.7.1.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
4 dependencies of derivation '/nix/store/jins4wxi59x8wapp0h6j6vyg3bgaycx8-python3.8-aplpy-2.0.3.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
2 dependencies of derivation '/nix/store/7p2aa224fddq0y2wpsr3py8alrhz52lh-python3.8-sunpy-1.0.6.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
3 dependencies of derivation '/nix/store/q8inbwl22grvvx130v506fhn4hhlwpl1-python3.8-spectral-cube-0.4.5.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
builder for '/nix/store/c8q0yadpha0aaldr4l32mqbm3nx0wak5-python3.9-astroquery-0.4.1.drv' failed with exit code 1; last 10 log lines:
  Executing pipInstallPhase
  /private/tmp/nix-build-python3.9-astroquery-0.4.1.drv-0/astroquery-0.4.1/dist /private/tmp/nix-build-python3.9-astroquery-0.4.1.drv-0/astroquery-0.4.1
  Processing ./astroquery-0.4.1-py3-none-any.whl
  Requirement already satisfied: keyring>=4.0 in /nix/store/rfppnjb1z277b9x18gykn0yr0lb686m1-python3.9-keyring-21.5.0/lib/python3.9/site-packages (from astroquery==0.4.1) (21.5.0)
  Requirement already satisfied: beautifulsoup4>=4.3.2 in /nix/store/mhczipdkgdb3mn0bg80y4pdfdk94brbj-python3.9-beautifulsoup4-4.9.3/lib/python3.9/site-packages (from astroquery==0.4.1) (4.9.3)
  Requirement already satisfied: html5lib>=0.999 in /nix/store/pv8249hl9gva0nng264p313ab4vxggd1-python3.9-html5lib-1.1/lib/python3.9/site-packages (from astroquery==0.4.1) (1.1)
  Requirement already satisfied: six in /nix/store/aa9mwhdqlywm144iwf0n2zs8laimn4kp-python3.9-six-1.15.0/lib/python3.9/site-packages (from astroquery==0.4.1) (1.15.0)
  Requirement already satisfied: numpy in /nix/store/7dh0935x2x0kv1mkr313fba14pyb8ywl-python3.9-numpy-1.19.4/lib/python3.9/site-packages (from astroquery==0.4.1) (1.19.4)
  ERROR: Could not find a version that satisfies the requirement astropy>=3.1 (from astroquery)
  ERROR: No matching distribution found for astropy>=3.1
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
builder for '/nix/store/mbk2pz01y03csl8jxjjw5wlazkazsizw-python3.9-pytest-astropy-header-0.1.2.drv' failed with exit code 1; last 10 log lines:
  FAILED tests/test_display.py::test_override_package_multiple[cli] - Assertion...
  FAILED tests/test_display.py::test_override_package_multiple[ini] - Assertion...
  FAILED tests/test_display.py::test_override_package_multiple[ini_list] - Asse...
  FAILED tests/test_display.py::test_override_package_multiple[conftest] - Asse...
  FAILED tests/test_display.py::test_nonexistent[cli] - AssertionError: assert ...
  FAILED tests/test_display.py::test_nonexistent[ini] - AssertionError: assert ...
  FAILED tests/test_display.py::test_nonexistent[ini_list] - AssertionError: as...
  FAILED tests/test_display.py::test_nonexistent[conftest] - AssertionError: as...
  FAILED tests/test_display.py::test_modify_in_conftest - AssertionError: asser...
  ========================= 16 failed, 3 passed in 2.14s =========================
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/dxrxx7qw75mrp4blhdxawqq661d3j14f-python3.9-pytest-astropy-0.8.0.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/5qr54xsh3f54crbwbikbm7wx9kwjvfk7-python3.9-asdf-2.7.1.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/d2f0r9d0l6w11bhj1nla95vnp4csba4s-python3.9-pyregion-2.0.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/iz6s2dm7vp8jncbcggjyflswq1jvs0hc-python3.9-radio_beam-0.3.2.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
1 dependencies of derivation '/nix/store/w2l8nvvxcsqvjayyaaxn1xv7fhs01683-python3.9-reproject-0.7.1.drv' failed to build
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
27 dependencies of derivation '/nix/store/x1k7bi69yyvgf75vn7n2vld2pzc2iajy-env.drv' failed to build
27 packages failed to build:
python37Packages.aplpy python37Packages.asdf python37Packages.astroquery python37Packages.pyregion python37Packages.pytest-astropy python37Packages.pytest-astropy-header python37Packages.radio_beam python37Packages.reproject python37Packages.spectral-cube python37Packages.sunpy python38Packages.aplpy python38Packages.asdf python38Packages.astroquery python38Packages.pyregion python38Packages.pytest-astropy python38Packages.pytest-astropy-header python38Packages.radio_beam python38Packages.reproject python38Packages.spectral-cube python38Packages.sunpy python39Packages.asdf python39Packages.astroquery python39Packages.pyregion python39Packages.pytest-astropy python39Packages.pytest-astropy-header python39Packages.radio_beam python39Packages.reproject

15 packages built:
python37Packages.astropy python37Packages.astropy-extension-helpers python37Packages.astropy-healpix python37Packages.pyavm python37Packages.pyerfa python38Packages.astropy python38Packages.astropy-extension-helpers python38Packages.astropy-healpix python38Packages.pyavm python38Packages.pyerfa python39Packages.astropy python39Packages.astropy-extension-helpers python39Packages.astropy-healpix python39Packages.pyavm python39Packages.pyerfa

error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/pmr65j11wsnxhcr65vh0d32hmyks5pws-python3.7-aplpy-2.0.3.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/mq2icysq7yyqlsy9bbn3ariwz04wa7hr-python3.7-asdf-2.7.1.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/wqsaw5dag00kvhqn0h9zraww9xl6dvbq-python3.7-pyregion-2.0.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/b431kwjyhbm8xhx0a8r8r715m135r9g5-python3.7-pytest-astropy-0.8.0.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/7inqpsxxdccjg53lig6d2p7sapah8ngd-python3.7-radio_beam-0.3.2.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/wy00s8aajpbrjjkj77lkjqfvjmj3h74n-python3.7-reproject-0.7.1.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/33xzq88wi7pkdadqm3p4hqdyfrpgr68m-python3.7-spectral-cube-0.4.5.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/rliyj37jz2nfxiz0jzi860lnd793qcpx-python3.7-sunpy-1.0.6.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/jins4wxi59x8wapp0h6j6vyg3bgaycx8-python3.8-aplpy-2.0.3.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/wpns5jcs5171v3l5mlrajyvf7rybjy24-python3.8-asdf-2.7.1.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/n30rslas6v19ipiv1r8dizbyjp22irgw-python3.8-pyregion-2.0.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/rbjn96q67ly4k0qx1n9vhmzjsb4dcf9x-python3.8-pytest-astropy-0.8.0.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/5pw8s9dq68pccfmlln5361liyh840khv-python3.8-radio_beam-0.3.2.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/hl7wkp9dzmz9dk0ln3nkkxsl15s5vp7l-python3.8-reproject-0.7.1.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/q8inbwl22grvvx130v506fhn4hhlwpl1-python3.8-spectral-cube-0.4.5.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/7p2aa224fddq0y2wpsr3py8alrhz52lh-python3.8-sunpy-1.0.6.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/5qr54xsh3f54crbwbikbm7wx9kwjvfk7-python3.9-asdf-2.7.1.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/d2f0r9d0l6w11bhj1nla95vnp4csba4s-python3.9-pyregion-2.0.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/dxrxx7qw75mrp4blhdxawqq661d3j14f-python3.9-pytest-astropy-0.8.0.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/iz6s2dm7vp8jncbcggjyflswq1jvs0hc-python3.9-radio_beam-0.3.2.drv' is not available
error: --- Error ---------------------------------------------------------------------------------------------------------------------------------------------------------------- nix
build log of '/nix/store/w2l8nvvxcsqvjayyaaxn1xv7fhs01683-python3.9-reproject-0.7.1.drv' is not available
$ nix-shell /Users/mcgibbon/.cache/nixpkgs-review/rev-aaf580220588d8a83ef1aee7fe04c1e4bb43c46c/shell.nix

pkgs/development/python-modules/astropy-extension-helpers/default.nix

pkgs/development/python-modules/pyerfa/default.nix

rmcgibbo · 2020-12-28T06:15:53Z

@jonringer: Comments addressed in force push.

It appears that the package isn't advertising its version number correctly, which is causing at least one of the downstream packages to fail (astroquery).

[nix-shell:~/nixcfg/debug]$ python -c 'from importlib import metadata; print(metadata.version("astropy"))'
0.0.0

Mic92 · 2020-12-28T06:43:21Z

@jonringer: Comments addressed in force push.

It appears that the package isn't advertising its version number correctly, which is causing at least one of the downstream packages to fail (astroquery).
[nix-shell:~/nixcfg/debug]$ python -c 'from importlib import metadata; print(metadata.version("astropy"))'
0.0.0

I think it uses setuptools-scm to get the version from git tags.
You need to export it as an environment variable during the build. You can achieve this by adding

SETUPTOOLS_SCM_PRETEND_VERSION = version;

to the expression: https://pypi.org/project/setuptools-scm/

rmcgibbo · 2020-12-28T20:34:56Z

Thanks for the tip, @Mic92. A bunch of commits later, I think I've fixed most of the astropy ecosystem now. 🤕

rmcgibbo · 2020-12-29T21:13:09Z

Result of nixpkgs-review pr 107770 run on x86_64-linux 1

37 packages built:

python37Packages.aplpy
python37Packages.asdf
python37Packages.astropy
python37Packages.astropy-extension-helpers
python37Packages.astropy-healpix
python37Packages.astroquery
python37Packages.drms
python37Packages.pyavm
python37Packages.pyerfa
python37Packages.pyregion
python37Packages.pytest-astropy
python37Packages.pytest-astropy-header
python37Packages.radio_beam
python37Packages.reproject
python37Packages.spectral-cube
python37Packages.sunpy
python38Packages.aplpy
python38Packages.asdf
python38Packages.astropy
python38Packages.astropy-extension-helpers
python38Packages.astropy-healpix
python38Packages.astroquery
python38Packages.drms
python38Packages.pyavm
python38Packages.pyerfa
python38Packages.pyregion
python38Packages.pytest-astropy
python38Packages.pytest-astropy-header
python38Packages.radio_beam
python38Packages.reproject
python38Packages.spectral-cube
python38Packages.sunpy
python39Packages.astropy
python39Packages.astropy-extension-helpers
python39Packages.astropy-healpix
python39Packages.pyavm
python39Packages.pyerfa

Mic92 · 2020-12-30T12:39:54Z

Result of nixpkgs-review pr 107770 run on x86_64-linux 1

37 packages built:

python37Packages.aplpy
python37Packages.asdf
python37Packages.astropy
python37Packages.astropy-extension-helpers
python37Packages.astropy-healpix
python37Packages.astroquery
python37Packages.drms
python37Packages.pyavm
python37Packages.pyerfa
python37Packages.pyregion
python37Packages.pytest-astropy
python37Packages.pytest-astropy-header
python37Packages.radio_beam
python37Packages.reproject
python37Packages.spectral-cube
python37Packages.sunpy
python38Packages.aplpy
python38Packages.asdf
python38Packages.astropy
python38Packages.astropy-extension-helpers
python38Packages.astropy-healpix
python38Packages.astroquery
python38Packages.drms
python38Packages.pyavm
python38Packages.pyerfa
python38Packages.pyregion
python38Packages.pytest-astropy
python38Packages.pytest-astropy-header
python38Packages.radio_beam
python38Packages.reproject
python38Packages.spectral-cube
python38Packages.sunpy
python39Packages.astropy
python39Packages.astropy-extension-helpers
python39Packages.astropy-healpix
python39Packages.pyavm
python39Packages.pyerfa

rmcgibbo requested review from FRidh and jonringer as code owners December 28, 2020 00:29

ofborg bot added 6.topic: python 8.has: package (new) labels Dec 28, 2020

ofborg bot requested a review from KentJames December 28, 2020 00:38

ofborg bot added 10.rebuild-darwin: 11-100 10.rebuild-linux: 11-100 labels Dec 28, 2020

rmcgibbo changed the title ~~Astropy~~ python3Packages.astropy: unbreak Dec 28, 2020

jonringer reviewed Dec 28, 2020

View reviewed changes

python3Packages.pyerfa: init at 1.7.1.1

182945f

rmcgibbo force-pushed the astropy branch from aaf5802 to 08bc34e Compare December 28, 2020 06:13

rmcgibbo added 11 commits December 28, 2020 15:16

python3Packages.astropy-extension-helpers: init at 0.1

7ef5a93

python3Packages.astropy: unbreak

8df2e76

python3Packages.astroquery: unbreak

545350f

python3Packages.drms: unbreak

39df1e5

python3Packages.asdf: unbreak

3430155

python3Packages.sunpy: 1.0.6 -> 2.0.6

0cdd25e

python3Packages.reproject: unbreak

f5dc54e

python3Packages.aplpy: unbreak

7a46847

python3Packages.reproject: unbreak

edbf7a3

python3Packages.spectral-cube: 0.4.5 -> 0.5.0

0bba94b

python3Packages.pytest-astropy-header: unbreak

d7ca809

rmcgibbo force-pushed the astropy branch from 08bc34e to d7ca809 Compare December 28, 2020 20:33

ofborg bot added the 8.has: clean-up label Dec 28, 2020

ofborg bot requested review from costrouc and smaret December 28, 2020 20:43

Mic92 merged commit c461a5d into NixOS:master Dec 30, 2020

rmcgibbo deleted the astropy branch December 31, 2020 04:58

rmcgibbo mentioned this pull request May 17, 2021

python3Packages.aplpy: fix with latest matplotlib #123379

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python3Packages.astropy: unbreak #107770

python3Packages.astropy: unbreak #107770

rmcgibbo commented Dec 28, 2020 •

edited

rmcgibbo commented Dec 28, 2020

rmcgibbo commented Dec 28, 2020

Mic92 commented Dec 28, 2020

rmcgibbo commented Dec 28, 2020

rmcgibbo commented Dec 29, 2020

Mic92 commented Dec 30, 2020

python3Packages.astropy: unbreak #107770

python3Packages.astropy: unbreak #107770

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rmcgibbo commented Dec 28, 2020 • edited

Motivation for this change

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rmcgibbo commented Dec 28, 2020

rmcgibbo commented Dec 28, 2020

Mic92 commented Dec 28, 2020

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Mic92 commented Dec 30, 2020

rmcgibbo commented Dec 28, 2020 •

edited