Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

varscan: 2.4.2 -> 2.4.4 #108437

Merged
merged 1 commit into from Jan 5, 2021
Merged

varscan: 2.4.2 -> 2.4.4 #108437

merged 1 commit into from Jan 5, 2021

Conversation

jbedo
Copy link
Contributor

@jbedo jbedo commented Jan 4, 2021 •
edited

Motivation for this change
Things done
  • Tested using sandboxing (nix.useSandbox on NixOS, or option sandbox in nix.conf on non-NixOS linux)
  • Built on platform(s)
    • NixOS
    • macOS
    • other Linux distributions
  • Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
  • Tested compilation of all pkgs that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review wip"
  • Tested execution of all binary files (usually in ./result/bin/)
  • Determined the impact on package closure size (by running nix path-info -S before and after)
  • Ensured that relevant documentation is up to date
  • Fits CONTRIBUTING.md.

@fabaff
Copy link
Member

fabaff commented Jan 5, 2021

Result of nixpkgs-review pr 108437 1

1 package built:
  • varscan

fabaff
fabaff approved these changes Jan 5, 2021
View reviewed changes
Copy link
Member

@fabaff fabaff left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more. 

$ ./varscan/bin/varscan 
VarScan v2.4.4

***NON-COMMERCIAL VERSION***

USAGE: java -jar VarScan.jar [COMMAND] [OPTIONS] 

COMMANDS:
        pileup2snp              Identify SNPs from a pileup file
        pileup2indel            Identify indels a pileup file
[...]
  • [-] all depending packages build

Looks good to me

@SuperSandro2000
Copy link
Member

This is a semi-automatic executed nixpkgs-review which does not build all packages (e.g. lumo, tensorflow or pytorch)
If you find some bugs or got suggestions for further things to search or run please reach out to SuperSandro2000 on IRC.

Result of nixpkgs-review pr 108437 run on x86_64-linux 1

1 package built:
  • varscan

@SuperSandro2000
Copy link
Member

This is a semi-automatic executed nixpkgs-review which does not build all packages (e.g. lumo, tensorflow or pytorch)
If you find some bugs or got suggestions for further things to search or run please reach out to SuperSandro2000 on IRC.

Result of nixpkgs-review pr 108437 run on x86_64-darwin 1

1 package built:
  • varscan

@SuperSandro2000 SuperSandro2000 merged commit 0af4d59 into NixOS:master Jan 5, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@fabaff fabaff fabaff approved these changes

Assignees
No one assigned
Labels
10.rebuild-darwin: 1-10 10.rebuild-darwin: 1 10.rebuild-linux: 1-10 10.rebuild-linux: 1 11.by: package-maintainer
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

None yet
3 participants
@jbedo @fabaff @SuperSandro2000