Skip to content
Permalink

Comparing changes

Choose two branches to see what’s changed or to start a new pull request. If you need to, you can also or learn more about diff comparisons.

Open a pull request

Create a new pull request by comparing changes across two branches. If you need to, you can also . Learn more about diff comparisons here.
base repository: NixOS/nixpkgs
Failed to load repositories. Confirm that selected base ref is valid, then try again.
Loading
base: 4bc3f833028b
Choose a base ref
...
head repository: NixOS/nixpkgs
Failed to load repositories. Confirm that selected head ref is valid, then try again.
Loading
compare: 7cd1e0bdd138
Choose a head ref
  • 4 commits
  • 4 files changed
  • 1 contributor

Commits on Jan 1, 2021

  1. python3Packages.flametree: init at 0.1.11

    @prusnak
    prusnak committed Jan 1, 2021
    Copy the full SHA
    7297439 View commit details

  2. python3Packages.python-codon-tables: init at 0.1.10

    @prusnak
    prusnak committed Jan 1, 2021
    Copy the full SHA
    aa30970 View commit details

  3. python3Packages.dnachisel: init at 3.2.5

    @prusnak
    prusnak committed Jan 1, 2021
    Copy the full SHA
    c6db0da View commit details

  4. Merge pull request #108153 from prusnak/dnachisel 

    python3Packages.dnachisel: init at 3.2.5
    @prusnak
    prusnak authored Jan 1, 2021
    Copy the full SHA
    7cd1e0b View commit details
41 changes: 41 additions & 0 deletions pkgs/development/python-modules/dnachisel/default.nix
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,41 @@
{ lib
, buildPythonPackage
, fetchPypi
, biopython
, docopt
, flametree
, numpy
, proglog
, python-codon-tables
}:

buildPythonPackage rec {
pname = "dnachisel";
version = "3.2.5";

src = fetchPypi {
inherit pname version;
sha256 = "35301c5eda0baca5902403504e0b5a22eb65da92c2bbd23199d95c4a6bf0ef37";
};

propagatedBuildInputs = [
biopython
docopt
flametree
numpy
proglog
python-codon-tables
];

# no tests in tarball
doCheck = false;

pythonImportsCheck = [ "dnachisel" ];

meta = with lib; {
homepage = "https://github.com/Edinburgh-Genome-Foundry/DnaChisel";
description = "Optimize DNA sequences under constraints";
license = licenses.mit;
maintainers = with maintainers; [ prusnak ];
};
}
26 changes: 26 additions & 0 deletions pkgs/development/python-modules/flametree/default.nix
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,26 @@
{ lib
, buildPythonPackage
, fetchPypi
}:

buildPythonPackage rec {
pname = "flametree";
version = "0.1.11";

src = fetchPypi {
inherit pname version;
sha256 = "c8eb81dea8c7f8261a2aa03d2bac98b1d21ebceec9c67efaac423f7c1b4fe061";
};

# no tests in tarball
doCheck = false;

pythonImportsCheck = [ "flametree" ];

meta = with lib; {
homepage = "https://github.com/Edinburgh-Genome-Foundry/Flametree";
description = "Python file and zip operations made easy";
license = licenses.mit;
maintainers = with maintainers; [ prusnak ];
};
}
27 changes: 27 additions & 0 deletions pkgs/development/python-modules/python-codon-tables/default.nix
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,27 @@
{ lib
, buildPythonPackage
, fetchPypi
}:

buildPythonPackage rec {
pname = "python-codon-tables";
version = "0.1.10";

src = fetchPypi {
pname = "python_codon_tables";
inherit version;
sha256 = "265beac928cbb77c6745bc728471adc7ffef933b794be303d272ecb9ad37d3d4";
};

# no tests in tarball
doCheck = false;

pythonImportsCheck = [ "python_codon_tables" ];

meta = with lib; {
homepage = "https://github.com/Edinburgh-Genome-Foundry/codon-usage-tables";
description = "Codon Usage Tables for Python, from kazusa.or.jp";
license = licenses.mit;
maintainers = with maintainers; [ prusnak ];
};
}
6 changes: 6 additions & 0 deletions pkgs/top-level/python-packages.nix
View file
Original file line number Diff line number Diff line change
@@ -1793,6 +1793,8 @@ in {

dm-sonnet = callPackage ../development/python-modules/dm-sonnet { };

dnachisel = callPackage ../development/python-modules/dnachisel { };

dnslib = callPackage ../development/python-modules/dnslib { };

dnspython = if isPy3k then
@@ -2139,6 +2141,8 @@ in {

flaky = callPackage ../development/python-modules/flaky { };

flametree = callPackage ../development/python-modules/flametree { };

flammkuchen = callPackage ../development/python-modules/flammkuchen { };

flask-admin = callPackage ../development/python-modules/flask-admin { };
@@ -4685,6 +4689,8 @@ in {

pysbd = callPackage ../development/python-modules/pysbd { };

python-codon-tables = callPackage ../development/python-modules/python-codon-tables { };

python-csxcad = callPackage ../development/python-modules/python-csxcad { };

python-openems = callPackage ../development/python-modules/python-openems { };