NixOS · Jul 9, 2020 · Jul 11, 2020 · Jul 16, 2020 · Jul 16, 2020 · Jul 16, 2020
diff --git a/nixos/doc/manual/development/writing-nixos-tests.xml b/nixos/doc/manual/development/writing-nixos-tests.xml
@@ -390,7 +390,7 @@ start_all()
     <listitem>
      <para>
       Copies a file from host to machine, e.g.,
-      <literal>copy_file_from_host("myfile", "/etc/my/important/file")</literal>.
+      <literal>copy_from_host("myfile", "/etc/my/important/file")</literal>.
      </para>
      <para>
       The first argument is the file on the host. The file needs to be

diff --git a/pkgs/applications/audio/bsequencer/default.nix b/pkgs/applications/audio/bsequencer/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "BSEQuencer";
-  version = "1.4.2";
+  version = "1.6.0";
 
   src = fetchFromGitHub {
     owner = "sjaehn";
     repo = pname;
     rev = "${version}";
-    sha256 = "1fz0p0ba00b7k7a8q9mxwj01jwl8xwh9a2npn00pbbdrg9zv4fdr";
+    sha256 = "0w21kzq695xy4i1r6xvvh7sad5m0rlmdgc7ykmrlzfsm1252dz80";
   };
 
   nativeBuildInputs = [ pkgconfig ];

diff --git a/pkgs/applications/graphics/drawio/default.nix b/pkgs/applications/graphics/drawio/default.nix
@@ -11,11 +11,11 @@
 
 stdenv.mkDerivation rec {
   pname = "drawio";
-  version = "13.3.9";
+  version = "13.4.5";
 
   src = fetchurl {
     url = "https://github.com/jgraph/drawio-desktop/releases/download/v${version}/draw.io-x86_64-${version}.rpm";
-    sha256 = "1i1idjy80x6a0w40lziivyhg8nnlbpri7xdqxikxy982vffgihwp";
+    sha256 = "1vp5krgj0xzhkiidj658ij6j10d2p97l1nifx0nrqysblcz2km3g";
   };
 
   nativeBuildInputs = [

diff --git a/pkgs/applications/misc/pdfarranger/default.nix b/pkgs/applications/misc/pdfarranger/default.nix
@@ -5,13 +5,13 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "pdfarranger";
-  version = "1.5.3";
+  version = "1.6.0";
 
   src = fetchFromGitHub {
     owner = "jeromerobert";
     repo = pname;
     rev = version;
-    sha256 = "0a9ap7p8iw57sn5nmhim7gp5as8gj6ir6l3p0bpmg4iqjsr4169h";
+    sha256 = "03siz4ar6flyvrrgh7hr7sslc6n9x5d9i13lc5rm2qnssd0qdich";
   };
 
   nativeBuildInputs = [
@@ -27,6 +27,7 @@ python3Packages.buildPythonApplication rec {
   propagatedBuildInputs = with python3Packages; [
     pygobject3
     pikepdf
+    img2pdf
     setuptools
   ];
 

diff --git a/pkgs/applications/networking/instant-messengers/zoom-us/default.nix b/pkgs/applications/networking/instant-messengers/zoom-us/default.nix
@@ -6,7 +6,7 @@
 , qtquickcontrols2, qtscript, qtsvg , qttools, qtwayland, qtwebchannel
 , qtwebengine
 # Runtime
-, coreutils, libjpeg_turbo, pciutils, procps, utillinux
+, coreutils, libjpeg_turbo, faac, pciutils, procps, utillinux
 , pulseaudioSupport ? true, libpulseaudio ? null
 }:
 
@@ -40,7 +40,7 @@ in mkDerivation {
   nativeBuildInputs = [ autoPatchelfHook ];
 
   buildInputs = [
-    dbus glib libGL libX11 libXfixes libuuid libxcb libjpeg_turbo qtbase
+    dbus glib libGL libX11 libXfixes libuuid libxcb libjpeg_turbo faac qtbase
     qtdeclarative qtgraphicaleffects qtlocation qtquickcontrols qtquickcontrols2
     qtscript qtwebchannel qtwebengine qtimageformats qtsvg qttools qtwayland
   ];
@@ -72,6 +72,9 @@ in mkDerivation {
       # TODO Patch this somehow; tries to dlopen './libturbojpeg.so' from cwd
       ln -s $(readlink -e "${libjpeg_turbo.out}/lib/libturbojpeg.so") $out/share/zoom-us/libturbojpeg.so
 
+      # Again, requires faac with a nonstandard filename.
+      ln -s $(readlink -e "${faac}/lib/libfaac.so") $out/share/zoom-us/libfaac1.so
+
       runHook postInstall
     '';
 

diff --git a/pkgs/applications/networking/irc/weechat/default.nix b/pkgs/applications/networking/irc/weechat/default.nix
@@ -27,12 +27,12 @@ let
   in
     assert lib.all (p: p.enabled -> ! (builtins.elem null p.buildInputs)) plugins;
     stdenv.mkDerivation rec {
-      version = "2.8";
+      version = "2.9";
       pname = "weechat";
 
       src = fetchurl {
         url = "https://weechat.org/files/src/weechat-${version}.tar.bz2";
-        sha256 = "0xpzl7985j47rpmly4r833jxd448xpy7chqphaxmhlql2c0gc08z";
+        sha256 = "12h4m4ag8cdab7q6f5n357mfg0fdayab1gcikncjkkid3bjd4r4g";
       };
 
       outputs = [ "out" "man" ] ++ map (p: p.name) enabledPlugins;

diff --git a/pkgs/applications/office/beamerpresenter/default.nix b/pkgs/applications/office/beamerpresenter/default.nix
@@ -1,15 +1,15 @@
-{ stdenv, mkDerivation, fetchFromGitHub, makeDesktopItem, installShellFiles,
+{ stdenv, mkDerivation, fetchFromGitHub, installShellFiles,
   qmake, qtbase, poppler, qtmultimedia }:
 
 mkDerivation rec {
   pname = "beamerpresenter";
-  version = "0.1.1";
+  version = "0.1.2";
 
   src = fetchFromGitHub {
     owner = "stiglers-eponym";
     repo = "BeamerPresenter";
     rev = "v${version}";
-    sha256 = "0j7wx3qqwhda33ig2464bi0j0a473y5p7ndy5f7f8x9cqdal1d01";
+    sha256 = "12xngnhwa3haf0pdxczgvhq1j20zbsr30y2bfn9qwmlhbwklhkj2";
   };
 
   nativeBuildInputs = [ qmake installShellFiles ];
@@ -26,23 +26,10 @@ mkDerivation rec {
   installPhase = ''
     install -m755 beamerpresenter -Dt $out/bin/
     install -m644 src/icons/beamerpresenter.svg -Dt $out/share/icons/hicolor/scalable/apps/
-    install -m644 $desktopItem/share/applications/*.desktop -Dt $out/share/applications/
+    install -m644 share/applications/beamerpresenter.desktop -Dt $out/share/applications/
     installManPage man/*.{1,5}
   '';
 
-  # TODO: replace with upstream's .desktop file once available.
-  # https://github.com/stiglers-eponym/BeamerPresenter/pull/4
-  desktopItem = makeDesktopItem {
-    name = pname;
-    desktopName = "BeamerPresenter";
-    genericName = "Beamer presentation viewer";
-    comment = "Simple dual screen pdf presentation software";
-    icon = "beamerpresenter";
-    categories = "Office;";
-    exec = "beamerpresenter %F";
-    mimeType = "application/pdf;application/x-pdf;";
-  };
-
   meta = with stdenv.lib; {
     description = "Simple dual screen pdf presentation software";
     homepage = "https://github.com/stiglers-eponym/BeamerPresenter";

diff --git a/pkgs/applications/radio/dsd/default.nix b/pkgs/applications/radio/dsd/default.nix
@@ -0,0 +1,44 @@
+{ stdenv, fetchFromGitHub, cmake
+, mbelib, libsndfile, itpp
+, portaudioSupport ? true, portaudio ? null
+}:
+
+assert portaudioSupport -> portaudio != null;
+
+stdenv.mkDerivation rec {
+  pname = "dsd";
+  version = "2018-07-01";
+
+  src = fetchFromGitHub {
+    owner = "szechyjs";
+    repo = "dsd";
+    rev = "f175834e45a1a190171dff4597165b27d6b0157b";
+    sha256 = "0w4r13sxvjwacdwxr326zr6p77a8p6ny0g6im574jliw5j3shlhr";
+  };
+
+  nativeBuildInputs = [ cmake ];
+  buildInputs = [
+    mbelib libsndfile itpp
+  ] ++ stdenv.lib.optionals portaudioSupport [ portaudio ];
+
+  enableParallelBuilding = true;
+
+  doCheck = true;
+  preCheck = ''
+    export LD_LIBRARY_PATH=$LD_LIBRARY_PATH''${LD_LIBRARY_PATH:+:}$PWD
+    export DYLD_LIBRARY_PATH=$DYLD_LIBRARY_PATH''${DYLD_LIBRARY_PATH:+:}$PWD
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Digital Speech Decoder";
+    longDescription = ''
+      DSD is able to decode several digital voice formats from discriminator
+      tap audio and synthesize the decoded speech. Speech synthesis requires
+      mbelib, which is a separate package.
+    '';
+    homepage = https://github.com/szechyjs/dsd;
+    license = licenses.gpl2;
+    platforms = platforms.unix;
+    maintainers = with maintainers; [ andrew-d ];
+  };
+}
diff --git a/pkgs/applications/science/geometry/gama/default.nix b/pkgs/applications/science/geometry/gama/default.nix
@@ -0,0 +1,24 @@
+{ stdenv, fetchurl, lib, expat, octave, libxml2, texinfo }:
+stdenv.mkDerivation rec {
+  pname = "gama";
+  version = "2.09";
+
+  src = fetchurl {
+    url = "mirror://gnu/${pname}/${pname}-${version}.tar.gz";
+    sha256 = "0c1b28frl6109arj09v4zr1xs859krn8871mkvis517g5pb55dc9";
+  };
+
+  buildInputs = [ expat ];
+
+  nativeBuildInputs = [ texinfo ];
+
+  checkInputs = [ octave libxml2 ];
+  doCheck = true;
+
+  meta = with lib ; {
+    description = "Tools for adjustment of geodetic networks";
+    homepage = "https://www.gnu.org/software/gama/";
+    license = licenses.gpl3Plus;
+    platforms = platforms.all;
+  };
+}
diff --git a/pkgs/applications/science/logic/cvc4/default.nix b/pkgs/applications/science/logic/cvc4/default.nix
@@ -1,19 +1,20 @@
-{ stdenv, fetchurl, cln, gmp, swig, pkgconfig
-, readline, libantlr3c, boost, jdk, autoreconfHook
-, python3, antlr3_4
+{ stdenv, fetchFromGitHub, cmake, cln, gmp, git, swig, pkgconfig
+, readline, libantlr3c, boost, jdk, python3, antlr3_4
 }:
 
 stdenv.mkDerivation rec {
   pname = "cvc4";
-  version = "1.6";
+  version = "1.8";
 
-  src = fetchurl {
-    url = "https://cvc4.cs.stanford.edu/downloads/builds/src/cvc4-${version}.tar.gz";
-    sha256 = "1iw793zsi48q91lxpf8xl8lnvv0jsj4whdad79rakywkm1gbs62w";
+  src = fetchFromGitHub {
+    owner  = "cvc4";
+    repo   = "cvc4";
+    rev    = version;
+    sha256 = "1rhs4pvzaa1wk00czrczp58b2cxfghpsnq534m0l3snnya2958jp";
   };
 
-  nativeBuildInputs = [ autoreconfHook pkgconfig ];
-  buildInputs = [ gmp cln readline swig libantlr3c antlr3_4 boost jdk python3 ];
+  nativeBuildInputs = [ pkgconfig cmake ];
+  buildInputs = [ gmp git python3.pkgs.toml cln readline swig libantlr3c antlr3_4 boost jdk python3 ];
   configureFlags = [
     "--enable-language-bindings=c,c++,java"
     "--enable-gpl"
@@ -30,6 +31,10 @@ stdenv.mkDerivation rec {
   preConfigure = ''
     patchShebangs ./src/
   '';
+  cmakeFlags = [
+    "-DCMAKE_BUILD_TYPE=Production"
+  ];
+
 
   enableParallelBuilding = true;
 

diff --git a/pkgs/applications/science/math/gfan/default.nix b/pkgs/applications/science/math/gfan/default.nix
@@ -8,7 +8,7 @@ stdenv.mkDerivation rec {
     sha256 = "02pihqb1lb76a0xbfwjzs1cd6ay3ldfxsm8dvsbl6qs3vkjxax56";
   };
 
-  patchPhase = stdenv.lib.optionalString stdenv.isDarwin ''
+  patchPhase = stdenv.lib.optionalString stdenv.cc.isClang ''
     substituteInPlace Makefile --replace "-fno-guess-branch-probability" ""
   '';