Add missing name to copyright header.

cdk · Oct 1, 2014 · 348884e · 348884e
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diff --git a/base/core/src/main/java/org/openscience/cdk/CDKConstants.java b/base/core/src/main/java/org/openscience/cdk/CDKConstants.java
@@ -1,4 +1,6 @@
-/* Copyright (C) 1997-2007   Christoph Steinbeck <steinbeck@users.sf.net>
+/* 
+ * Copyright (C) 1997-2007  Christoph Steinbeck <steinbeck@users.sf.net>
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  *  Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/base/core/src/main/java/org/openscience/cdk/config/Elements.java b/base/core/src/main/java/org/openscience/cdk/config/Elements.java
@@ -1,4 +1,6 @@
-/* Copyright (C) 2006-2012  Egon Willighagen <egonw@users.sf.net>
+/* 
+ * Copyright (C) 2006-2012  Egon Willighagen <egonw@users.sf.net>
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/base/core/src/main/java/org/openscience/cdk/tools/periodictable/PeriodicTable.java b/base/core/src/main/java/org/openscience/cdk/tools/periodictable/PeriodicTable.java
@@ -1,5 +1,6 @@
 /* Copyright (C) 2008  Rajarshi Guha <rajarshi@users.sf.net>
  *               2011  Jonathan Alvarsson <jonalv@users.sf.net>
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sf.net
  *

diff --git a/base/data/src/main/java/org/openscience/cdk/AtomContainerSet.java b/base/data/src/main/java/org/openscience/cdk/AtomContainerSet.java
@@ -1,4 +1,6 @@
-/* Copyright (C) 2003-2007  Christoph Steinbeck <steinbeck@users.sf.net>
+/* 
+ * Copyright (C) 2003-2007  Christoph Steinbeck <steinbeck@users.sf.net>
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  *  Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/RGroupList.java b/base/isomorphism/src/main/java/org/openscience/cdk/isomorphism/matchers/RGroupList.java
@@ -1,5 +1,6 @@
 /*
  * Copyright (C) 2010  Mark Rijnbeek <mark_rynbeek@users.sf.net>
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/base/reaction/src/main/java/org/openscience/cdk/reaction/ReactionEngine.java b/base/reaction/src/main/java/org/openscience/cdk/reaction/ReactionEngine.java
@@ -1,4 +1,6 @@
-/* Copyright (C) 2008 Miguel Rojas <miguelrojasch@users.sf.net>
+/* 
+ * Copyright (C) 2008  Miguel Rojas <miguelrojasch@users.sf.net>
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  *  Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/base/standard/src/main/java/org/openscience/cdk/ringsearch/AllRingsFinder.java b/base/standard/src/main/java/org/openscience/cdk/ringsearch/AllRingsFinder.java
@@ -2,6 +2,7 @@
  *                    2009  Mark Rijnbeek <mark_rynbeek@users.sf.net>
  *                    2013  European Bioinformatics Institute (EMBL-EBI)
  *                          John May <jwmay@users.sf.net>
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/base/standard/src/main/java/org/openscience/cdk/tools/HOSECodeGenerator.java b/base/standard/src/main/java/org/openscience/cdk/tools/HOSECodeGenerator.java
@@ -1,5 +1,6 @@
 /* Copyright (C) 1997-2007  Christoph Steinbeck <steinbeck@users.sf.net>
  *                    2008  Egon Willighagen <egonw@users.sf.net>
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/...tandard/src/main/java/org/openscience/cdk/tools/manipulator/AtomContainerManipulator.java b/...tandard/src/main/java/org/openscience/cdk/tools/manipulator/AtomContainerManipulator.java
@@ -1,4 +1,6 @@
-/* Copyright (C) 2003-2007  The Chemistry Development Kit (CDK) project
+/* 
+ * Copyright (C) 2003-2007  The Chemistry Development Kit (CDK) project
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/base/standard/src/main/java/org/openscience/cdk/validate/ProblemMarker.java b/base/standard/src/main/java/org/openscience/cdk/validate/ProblemMarker.java
@@ -1,4 +1,6 @@
-/* Copyright (C) 2003-2007  The Chemistry Development Kit (CDK) project
+/* 
+ * Copyright (C) 2003-2007  The Chemistry Development Kit (CDK) project
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/.../valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java b/.../valencycheck/src/main/java/org/openscience/cdk/tools/AtomTypeAwareSaturationChecker.java
@@ -1,4 +1,6 @@
-/*  Copyright (C) 2012  Klas Jönsson <klas.joensson@gmail.com>
+/*  
+ * Copyright (C) 2012  Klas Jönsson <klas.joensson@gmail.com>
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  *  Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/descriptor/cip/src/main/java/org/openscience/cdk/geometry/cip/rules/MassNumberRule.java b/descriptor/cip/src/main/java/org/openscience/cdk/geometry/cip/rules/MassNumberRule.java
@@ -1,4 +1,5 @@
 /* Copyright (C) 2010  Egon Willighagen <egonw@users.sf.net>
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/...ic/src/main/java/org/openscience/cdk/qsar/descriptors/atomic/RDFProtonDescriptor_GDR.java b/...ic/src/main/java/org/openscience/cdk/qsar/descriptors/atomic/RDFProtonDescriptor_GDR.java
@@ -1,5 +1,6 @@
 /* Copyright (C) 2004-2007  Matteo Floris <mfe4@users.sf.net>
  * Copyright (C) 2006-2007  Federico
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/...main/java/org/openscience/cdk/qsar/descriptors/bond/AtomicNumberDifferenceDescriptor.java b/...main/java/org/openscience/cdk/qsar/descriptors/bond/AtomicNumberDifferenceDescriptor.java
@@ -1,4 +1,5 @@
 /* Copyright (C) 2007-2008  Egon Willighagen <egonw@users.sf.net>
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/...lecular/src/main/java/org/openscience/cdk/qsar/descriptors/molecular/ALOGPDescriptor.java b/...lecular/src/main/java/org/openscience/cdk/qsar/descriptors/molecular/ALOGPDescriptor.java
@@ -1,5 +1,6 @@
 /* Copyright (C) 2007  Todd Martin (Environmental Protection Agency)  <Martin.Todd@epamail.epa.gov>
  * Copyright (C) 2007  Nikolay Kochev <nick@argon.acad.bg>
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/...lar/src/main/java/org/openscience/cdk/qsar/descriptors/molecular/SmallRingDescriptor.java b/...lar/src/main/java/org/openscience/cdk/qsar/descriptors/molecular/SmallRingDescriptor.java
@@ -1,4 +1,5 @@
-/* Copyright (c) 2014 Collaborative Drug Discovery, Inc. <alex@collaborativedrug.com>
+/* Copyright (c) 2014  Collaborative Drug Discovery, Inc. <alex@collaborativedrug.com>
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Implemented by Alex M. Clark, produced by Collaborative Drug Discovery, Inc.
  * Made available to the CDK community under the terms of the GNU LGPL.

diff --git a/...src/main/java/org/openscience/cdk/renderer/generators/standard/StandardBondGenerator.java b/...src/main/java/org/openscience/cdk/renderer/generators/standard/StandardBondGenerator.java
@@ -1,6 +1,7 @@
 /*
- * Copyright (c) 2014 European Bioinformatics Institute (EMBL-EBI)
- *                    John May <jwmay@users.sf.net>
+ * Copyright (c) 2014  European Bioinformatics Institute (EMBL-EBI)
+ *                     John May <jwmay@users.sf.net>
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/legacy/src/main/java/org/openscience/cdk/iupac/parser/MoleculeBuilder.java b/legacy/src/main/java/org/openscience/cdk/iupac/parser/MoleculeBuilder.java
@@ -1,5 +1,7 @@
-/* Copyright (C) 2003  University of Manchester
- *   Copyright (C) 2003-2007  The Chemistry Development Kit (CDK) Project
+/* 
+ * Copyright (C) 2003  University of Manchester
+ *          2003-2007  The Chemistry Development Kit (CDK) Project
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  *   This library is free software; you can redistribute it and/or
  *   modify it under the terms of the GNU Lesser General Public

diff --git a/legacy/src/main/java/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java b/legacy/src/main/java/org/openscience/cdk/ringsearch/cyclebasis/SimpleCycleBasis.java
@@ -1,4 +1,5 @@
 /* Copyright (C) 2004-2009  Ulrich Bauer <ulrich.bauer@alumni.tum.de>
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/misc/extra/src/main/java/org/openscience/cdk/graph/invariant/HuLuIndexTool.java b/misc/extra/src/main/java/org/openscience/cdk/graph/invariant/HuLuIndexTool.java
@@ -1,4 +1,6 @@
-/* Copyright (C) 1997-2007  The Chemistry Development Kit (CDK) project
+/* 
+ * Copyright (C) 1997-2007  The Chemistry Development Kit (CDK) project
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/storage/io/src/main/java/org/openscience/cdk/io/MDLRXNReader.java b/storage/io/src/main/java/org/openscience/cdk/io/MDLRXNReader.java
@@ -1,4 +1,5 @@
 /* Copyright (C) 2003-2007  The Chemistry Development Kit (CDK) project
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/storage/io/src/main/java/org/openscience/cdk/io/MDLV2000Reader.java b/storage/io/src/main/java/org/openscience/cdk/io/MDLV2000Reader.java
@@ -1,5 +1,6 @@
 /* Copyright (C) 1997-2007  Christoph Steinbeck <steinbeck@users.sourceforge.net>
  *                    2010  Egon Willighagen <egonw@users.sourceforge.net>
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  *  Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/storage/io/src/main/java/org/openscience/cdk/io/cml/QSARConvention.java b/storage/io/src/main/java/org/openscience/cdk/io/cml/QSARConvention.java
@@ -1,4 +1,5 @@
 /* Copyright (C) 2002-2007  Egon Willighagen <egonw@users.sf.net>
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *
@@ -160,5 +161,4 @@ private IDescriptorResult newDescriptorResultArray(String descriptorValue) {
         }
         return result;
     }
-
 }
diff --git a/storage/io/src/main/java/org/openscience/cdk/io/iterator/IteratingSDFReader.java b/storage/io/src/main/java/org/openscience/cdk/io/iterator/IteratingSDFReader.java
@@ -1,4 +1,5 @@
 /* Copyright (C) 2003-2007  The Chemistry Development Kit (CDK) project
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/storage/io/src/test/java/org/openscience/cdk/io/MDLV2000PropertiesBlockTest.java b/storage/io/src/test/java/org/openscience/cdk/io/MDLV2000PropertiesBlockTest.java
@@ -1,6 +1,7 @@
 /*
- * Copyright (c) 2013 European Bioinformatics Institute (EMBL-EBI)
- *                    John May <jwmay@users.sf.net>
+ * Copyright (c) 2013  European Bioinformatics Institute (EMBL-EBI)
+ *                     John May <jwmay@users.sf.net>
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/storage/io/src/test/java/org/openscience/cdk/io/MDLV2000ReaderTest.java b/storage/io/src/test/java/org/openscience/cdk/io/MDLV2000ReaderTest.java
@@ -1,4 +1,6 @@
-/* Copyright (C) 2003-2007  The Chemistry Development Kit (CDK) project
+/* 
+ * Copyright (C) 2003-2007  The Chemistry Development Kit (CDK) project
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@slists.sourceforge.net
  *

diff --git a/storage/iordf/src/main/java/org/openscience/cdk/libio/jena/Convertor.java b/storage/iordf/src/main/java/org/openscience/cdk/libio/jena/Convertor.java
@@ -1,4 +1,5 @@
 /* Copyright (C) 2009  Egon Willighagen <egonw@users.sf.net>
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: jchempaint-devel@lists.sourceforge.net
  *

diff --git a/storage/pdb/src/main/java/org/openscience/cdk/io/PDBReader.java b/storage/pdb/src/main/java/org/openscience/cdk/io/PDBReader.java
@@ -1,4 +1,5 @@
 /* Copyright (C) 1997-2007  The Chemistry Development Kit (CDK) project
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/storage/smiles/src/main/java/org/openscience/cdk/normalize/Normalizer.java b/storage/smiles/src/main/java/org/openscience/cdk/normalize/Normalizer.java
@@ -1,4 +1,6 @@
-/*  Copyright (C) 2004-2010  The Chemistry Development Kit (CDK) project
+/*  
+ *  Copyright (C) 2004-2010  The Chemistry Development Kit (CDK) project
+ *                     2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  *  Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/storage/smiles/src/main/java/org/openscience/cdk/smiles/DeduceBondSystemTool.java b/storage/smiles/src/main/java/org/openscience/cdk/smiles/DeduceBondSystemTool.java
@@ -1,4 +1,6 @@
-/* Copyright (C) 2002-2007  The Chemistry Development Kit (CDK) project
+/* 
+ *  Copyright (C) 2002-2007  The Chemistry Development Kit (CDK) project
+ *                     2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  *  Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/tool/builder3d/src/main/java/org/openscience/cdk/modeling/builder3d/ModelBuilder3D.java b/tool/builder3d/src/main/java/org/openscience/cdk/modeling/builder3d/ModelBuilder3D.java
@@ -1,4 +1,6 @@
-/* Copyright (C) 2005-2007  Christian Hoppe <chhoppe@users.sf.net>
+/* 
+ * Copyright (C) 2005-2007  Christian Hoppe <chhoppe@users.sf.net>
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  *  Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/tool/builder3d/src/main/java/org/openscience/cdk/modeling/builder3d/TemplateHandler3D.java b/tool/builder3d/src/main/java/org/openscience/cdk/modeling/builder3d/TemplateHandler3D.java
@@ -1,5 +1,6 @@
 /*  Copyright (C) 2005-2007  Christian Hoppe <chhoppe@users.sf.net>
  *                     2011  Egon Willighagen <egonw@users.sf.net>
+ *                     2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  *  Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/tool/formula/src/main/java/org/openscience/cdk/formula/IsotopePatternGenerator.java b/tool/formula/src/main/java/org/openscience/cdk/formula/IsotopePatternGenerator.java
@@ -1,4 +1,5 @@
 /* Copyright (C) 2007  Miguel Rojasch <miguelrojasch@users.sf.net>
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/tool/formula/src/main/java/org/openscience/cdk/formula/MassToFormulaTool.java b/tool/formula/src/main/java/org/openscience/cdk/formula/MassToFormulaTool.java
@@ -1,4 +1,5 @@
 /* Copyright (C) 2007  Miguel Rojasch <miguelrojasch@users.sf.net>
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/...mula/src/main/java/org/openscience/cdk/tools/manipulator/MolecularFormulaManipulator.java b/...mula/src/main/java/org/openscience/cdk/tools/manipulator/MolecularFormulaManipulator.java
@@ -1,4 +1,5 @@
 /* Copyright (C) 2007  Miguel Rojasch <miguelrojasch@users.sf.net>
+ *               2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *

diff --git a/tool/sdg/src/main/java/org/openscience/cdk/layout/RingPlacer.java b/tool/sdg/src/main/java/org/openscience/cdk/layout/RingPlacer.java
@@ -1,5 +1,6 @@
 /* Copyright (C) 1997-2007  The Chemistry Development Kit (CDK) project
  *                    2008  Gilleain Torrance <gilleain@users.sf.net>
+ *                    2014  Mark B Vine (orcid:0000-0002-7794-0426)
  *
  * Contact: cdk-devel@lists.sourceforge.net
  *