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  • 19 commits
  • 17 files changed
  • 1 contributor

Commits on Sep 12, 2015

  1. General mechanism for hidding certain parts of the depiction.

    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  2. Render abbreviaitons with zero or one attachment. We do this by hidin…

    …g parts we don't want to show, remapping some atom symbols or adding a label (for zero attach abbreviations).
    
    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  3. Roundtrip parent atom list for display "multiple" groups.

    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  4. To display multiple groups correctly we need to hide certain atoms an…

    …d bonds. To hide atoms we take the set complement of the parent atom list in the atom list.
    
    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  5. Document the display shortcut rendering methods.

    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  6. Component ordering.

    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  7. Rendering of mixtures and their components.

    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  8. Additional Sgroup type - modification.

    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  9. Correct subscript display for polymer brackets.

    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  10. Remove NaN condition - this was being produced when atoms were on top…

    … of each other but actually for Sgroups we want these (carbons) to be hidden.
    
    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  11. Sensible defaults for SRU display.

    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  12. Improved bracket display - now displays cases when more than one brac…

    …ket and they always point the right way.
    
    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  13. Better median bond length when atoms are placed on top of each other …

    …as in multiple group Sgroups.
    
    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  14. Cleanup imports and correct name of modified polymer type.

    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  15. Simplified remapped label generation.

    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  16. Utility to class to help with reversing and formatting abbrevation la…

    …bels.
    
    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  17. Use constants for style as having italics is also nice.

    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  18. Rendering of formatted abbreviation labels.

    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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  19. Only certain chemical prefixes are italicised.

    Signed-off-by: Egon Willighagen <egon.willighagen@gmail.com>
    johnmay authored and egonw committed Sep 12, 2015
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