Added test suite stuff for the QSAR feature

bioclipse · Sep 13, 2011 · 0564437 · 0564437
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Showing 12 changed files with 1,132 additions and 2 deletions.
diff --git a/features/net.bioclipse.qsar.test_feature/.project b/features/net.bioclipse.qsar.test_feature/.project
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+	<name>net.bioclipse.qsar.test_feature</name>
+	<comment></comment>
+	<projects>
+	</projects>
+	<buildSpec>
+		<buildCommand>
+			<name>org.eclipse.pde.FeatureBuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
+	</buildSpec>
+	<natures>
+		<nature>org.eclipse.pde.FeatureNature</nature>
+	</natures>
+</projectDescription>
diff --git a/features/net.bioclipse.qsar.test_feature/QSARPluginTestSuite.launch b/features/net.bioclipse.qsar.test_feature/QSARPluginTestSuite.launch
@@ -0,0 +1,49 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<launchConfiguration type="org.eclipse.pde.ui.JunitLaunchConfig">
+<setAttribute key="additional_plugins"/>
+<booleanAttribute key="append.args" value="true"/>
+<booleanAttribute key="askclear" value="false"/>
+<booleanAttribute key="automaticAdd" value="true"/>
+<booleanAttribute key="automaticValidate" value="false"/>
+<stringAttribute key="bootstrap" value=""/>
+<stringAttribute key="checked" value="[NONE]"/>
+<booleanAttribute key="clearConfig" value="true"/>
+<booleanAttribute key="clearws" value="true"/>
+<booleanAttribute key="clearwslog" value="false"/>
+<stringAttribute key="configLocation" value="${workspace_loc}/.metadata/.plugins/org.eclipse.pde.core/pde-junit"/>
+<booleanAttribute key="default" value="false"/>
+<stringAttribute key="featureDefaultLocation" value="workspace"/>
+<stringAttribute key="featurePluginResolution" value="workspace"/>
+<booleanAttribute key="includeOptional" value="true"/>
+<stringAttribute key="location" value="${workspace_loc}/../junit-workspace"/>
+<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">
+<listEntry value="/net.bioclipse.qsar.test/src/net/bioclipse/qsar/business/test/AllQsarManagerPluginTests.java"/>
+</listAttribute>
+<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">
+<listEntry value="1"/>
+</listAttribute>
+<stringAttribute key="org.eclipse.jdt.junit.CONTAINER" value=""/>
+<booleanAttribute key="org.eclipse.jdt.junit.KEEPRUNNING_ATTR" value="false"/>
+<stringAttribute key="org.eclipse.jdt.junit.TESTNAME" value=""/>
+<stringAttribute key="org.eclipse.jdt.junit.TEST_KIND" value="org.eclipse.jdt.junit.loader.junit4"/>
+<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="net.bioclipse.qsar.test.business.AllQsarManagerPluginTests"/>
+<stringAttribute key="org.eclipse.jdt.launching.PROGRAM_ARGUMENTS" value="-os ${target.os} -ws ${target.ws} -arch ${target.arch} -nl ${target.nl} -consoleLog"/>
+<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="net.bioclipse.qsar.test"/>
+<stringAttribute key="org.eclipse.jdt.launching.SOURCE_PATH_PROVIDER" value="org.eclipse.pde.ui.workbenchClasspathProvider"/>
+<stringAttribute key="pde.version" value="3.3"/>
+<stringAttribute key="product" value="net.bioclipse.ui.product"/>
+<booleanAttribute key="run_in_ui_thread" value="true"/>
+<setAttribute key="selected_features">
+<setEntry value="net.bioclipse.qsar.test_feature:default"/>
+<setEntry value="net.bioclipse.qsar_feature:default"/>
+<setEntry value="net.bioclipse.core_feature:default"/>
+<setEntry value="org.eclipse.equinox.p2.user.ui:default"/>
+<setEntry value="org.eclipse.rcp:default"/>
+</setAttribute>
+<booleanAttribute key="show_selected_only" value="true"/>
+<booleanAttribute key="tracing" value="false"/>
+<booleanAttribute key="useCustomFeatures" value="true"/>
+<booleanAttribute key="useDefaultConfig" value="true"/>
+<booleanAttribute key="useDefaultConfigArea" value="false"/>
+<booleanAttribute key="useProduct" value="true"/>
+</launchConfiguration>
diff --git a/features/net.bioclipse.qsar.test_feature/build.properties b/features/net.bioclipse.qsar.test_feature/build.properties
@@ -0,0 +1 @@
+bin.includes = feature.xml
diff --git a/features/net.bioclipse.qsar.test_feature/feature.xml b/features/net.bioclipse.qsar.test_feature/feature.xml
@@ -0,0 +1,169 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<feature
+      id="net.bioclipse.qsar.test_feature"
+      label="QSAR Test Feature"
+      version="2.5.0.qualifier"
+      provider-name="The Bioclipse Project"
+      plugin="net.bioclipse.qsar.test">
+
+   <description>
+      QSAR (Quantitative Structure-Activity Relationship) functionality
+for Bioclipse.
+   </description>
+
+   <copyright>
+      (C) 2006-2009 The Bioclipse Project contributors and others.
+   </copyright>
+
+   <license url="http://www.eclipse.org/org/documents/epl-v10.php">
+      This feature and the accompanying materials are made available
+under the terms of the Eclipse Public License v1.0 + exception,
+putting no constraints on choice of backend and/or license for
+creating plugins for Bioclipse; it is totally open for both open
+source plugins as well as commercial. The exception allows GPL
+plugins to be written and run in any combination with EPL licensed
+plugins, addressing incompatibility between the EPL and the GPL
+v.2.
+The Eclipse Public License accompanies this distribution, and
+is available at http://www.eclipse.org/legal/epl-v10.html
+   </license>
+
+   <requires>
+      <import feature="net.bioclipse.rdf_feature" version="2.4.0" match="greaterOrEqual"/>
+      <import feature="net.bioclipse.chemoinformatics_feature" version="2.4.0" match="greaterOrEqual"/>
+   </requires>
+
+   <plugin
+         id="net.bioclipse.qsar"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="org.eclipse.emf"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="org.eclipse.emf.ecore"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="org.eclipse.emf.ecore.edit"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="org.eclipse.emf.ecore.xmi"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="org.eclipse.emf.edit"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="org.eclipse.emf.common"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="org.eclipse.emf.edit.ui"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="org.eclipse.emf.databinding"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="org.eclipse.emf.databinding.edit"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="org.eclipse.emf.common.ui"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="net.bioclipse.cdk.qsar"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="net.bioclipse.qsar.model"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="net.bioclipse.qsar.model.edit"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="net.bioclipse.qsar.ui"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="net.bioclipse.bibtexml"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="net.bioclipse.bibtexml.edit"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="org.eclipse.emf.ecore.change"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+   <plugin
+         id="net.bioclipse.cdk.qsar.rest"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
+</feature>
diff --git a/plugins/net.bioclipse.qsar.test/META-INF/MANIFEST.MF b/plugins/net.bioclipse.qsar.test/META-INF/MANIFEST.MF
@@ -10,10 +10,14 @@ Require-Bundle: org.eclipse.ui,
  net.bioclipse.core,
  net.bioclipse.qsar.model;bundle-version="1.0.0",
  net.bioclipse.qsar.model.edit;bundle-version="1.0.0",
- net.bioclipse.qsar.ui;bundle-version="2.0.0"
+ net.bioclipse.qsar.ui;bundle-version="2.0.0",
+ net.bioclipse.core.tests;bundle-version="2.5.0"
 Bundle-ActivationPolicy: lazy
 Bundle-RequiredExecutionEnvironment: J2SE-1.5
-Import-Package: org.apache.log4j, org.junit
+Import-Package: org.apache.log4j,
+ org.junit,
+ org.junit.runner,
+ org.junit.runners
 Export-Package: net.bioclipse.qsar.test,
  net.bioclipse.qsar.test.business
 Bundle-ClassPath: .
diff --git a/plugins/net.bioclipse.qsar.test/src/net/bioclipse/qsar/test/business/APITest.java b/plugins/net.bioclipse.qsar.test/src/net/bioclipse/qsar/test/business/APITest.java
@@ -0,0 +1,37 @@
+/*******************************************************************************
+ * Copyright (c) 2011  Egon Willighagen <egon.willighagen@ki.se>
+ * 
+ * All rights reserved. This program and the accompanying materials
+ * are made available under the terms of the Eclipse Public License v1.0
+ * which accompanies this distribution, and is available at
+ * http://www.eclipse.org/legal/epl-v10.html
+ *
+ * Contact: Bioclipse Project <http://www.bioclipse.net>
+ ******************************************************************************/
+package net.bioclipse.qsar.test.business;
+
+import net.bioclipse.core.tests.AbstractManagerTest;
+import net.bioclipse.managers.business.IBioclipseManager;
+import net.bioclipse.qsar.business.IQsarManager;
+import net.bioclipse.qsar.business.QsarManager;
+
+/**
+ * JUnit tests for checking if the tested Manager is properly tested.
+ * 
+ * @author egonw
+ */
+public class APITest extends AbstractManagerTest {
+
+    private static QsarManager manager = new QsarManager();
+
+    @Override
+    public IBioclipseManager getManager() {
+        return manager;
+    }
+
+    @Override
+    public Class<? extends IBioclipseManager> getManagerInterface() {
+        return IQsarManager.class;
+    }
+
+}