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1.5.8 JavaDoc
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@johnmay
johnmay committed Sep 10, 2014
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37 changes: 34 additions & 3 deletions 1.5/docs/api/allclasses-frame.html
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37 changes: 34 additions & 3 deletions 1.5/docs/api/allclasses-noframe.html
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<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_21) on Thu Jul 17 15:12:58 BST 2014 -->
<!-- Generated by javadoc (version 1.7.0_67) on Wed Sep 10 14:46:01 BST 2014 -->
<meta http-equiv="Content-Type" content="text/html" charset="UTF-8">
<title>All Classes (cdk 1.5.7 API)</title>
<meta name="date" content="2014-07-17">
<title>All Classes (cdk 1.5.8 API)</title>
<meta name="date" content="2014-09-10">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
</head>
<body>
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<li><a href="org/openscience/cdk/debug/DebugRingSet.html" title="class in org.openscience.cdk.debug">DebugRingSet</a></li>
<li><a href="org/openscience/cdk/debug/DebugSingleElectron.html" title="class in org.openscience.cdk.debug">DebugSingleElectron</a></li>
<li><a href="org/openscience/cdk/debug/DebugStrand.html" title="class in org.openscience.cdk.debug">DebugStrand</a></li>
<li><a href="org/openscience/cdk/debug/DebugSubstance.html" title="class in org.openscience.cdk.debug">DebugSubstance</a></li>
<li><a href="org/openscience/cdk/smiles/DeduceBondSystemTool.html" title="class in org.openscience.cdk.smiles">DeduceBondSystemTool</a></li>
<li><a href="org/openscience/cdk/smsd/algorithm/matchers/DefaultBondMatcher.html" title="class in org.openscience.cdk.smsd.algorithm.matchers">DefaultBondMatcher</a></li>
<li><a href="org/openscience/cdk/DefaultChemObjectBuilder.html" title="class in org.openscience.cdk">DefaultChemObjectBuilder</a></li>
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<li><a href="org/openscience/cdk/validate/Geometry3DValidator.html" title="class in org.openscience.cdk.validate">Geometry3DValidator</a></li>
<li><a href="org/openscience/cdk/geometry/GeometryTools.html" title="class in org.openscience.cdk.geometry">GeometryTools</a></li>
<li><a href="org/openscience/cdk/geometry/GeometryTools.CoordinateCoverage.html" title="enum in org.openscience.cdk.geometry">GeometryTools.CoordinateCoverage</a></li>
<li><a href="org/openscience/cdk/geometry/GeometryUtil.html" title="class in org.openscience.cdk.geometry">GeometryUtil</a></li>
<li><a href="org/openscience/cdk/geometry/GeometryUtil.CoordinateCoverage.html" title="enum in org.openscience.cdk.geometry">GeometryUtil.CoordinateCoverage</a></li>
<li><a href="org/openscience/cdk/io/formats/GhemicalMMFormat.html" title="class in org.openscience.cdk.io.formats">GhemicalMMFormat</a></li>
<li><a href="org/openscience/cdk/io/GhemicalMMReader.html" title="class in org.openscience.cdk.io">GhemicalMMReader</a></li>
<li><a href="org/openscience/cdk/io/formats/GhemicalSPMFormat.html" title="class in org.openscience.cdk.io.formats">GhemicalSPMFormat</a></li>
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<li><a href="org/openscience/cdk/interfaces/IStereoElement.html" title="interface in org.openscience.cdk.interfaces"><i>IStereoElement</i></a></li>
<li><a href="org/openscience/cdk/interfaces/IStrand.html" title="interface in org.openscience.cdk.interfaces"><i>IStrand</i></a></li>
<li><a href="org/openscience/cdk/structgen/IStructureGenerationListener.html" title="interface in org.openscience.cdk.structgen"><i>IStructureGenerationListener</i></a></li>
<li><a href="org/openscience/cdk/interfaces/ISubstance.html" title="interface in org.openscience.cdk.interfaces"><i>ISubstance</i></a></li>
<li><a href="org/openscience/cdk/io/iterator/IteratingMDLConformerReader.html" title="class in org.openscience.cdk.io.iterator">IteratingMDLConformerReader</a></li>
<li><a href="org/openscience/cdk/io/iterator/IteratingPCCompoundASNReader.html" title="class in org.openscience.cdk.io.iterator">IteratingPCCompoundASNReader</a></li>
<li><a href="org/openscience/cdk/io/iterator/IteratingPCCompoundXMLReader.html" title="class in org.openscience.cdk.io.iterator">IteratingPCCompoundXMLReader</a></li>
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<li><a href="org/openscience/cdk/Monomer.html" title="class in org.openscience.cdk">Monomer</a></li>
<li><a href="org/openscience/cdk/silent/Monomer.html" title="class in org.openscience.cdk.silent">Monomer</a></li>
<li><a href="org/openscience/cdk/io/formats/MOPAC2002Format.html" title="class in org.openscience.cdk.io.formats">MOPAC2002Format</a></li>
<li><a href="org/openscience/cdk/io/formats/MOPAC2007Format.html" title="class in org.openscience.cdk.io.formats">MOPAC2007Format</a></li>
<li><a href="org/openscience/cdk/io/formats/MOPAC2009Format.html" title="class in org.openscience.cdk.io.formats">MOPAC2009Format</a></li>
<li><a href="org/openscience/cdk/io/formats/MOPAC2012Format.html" title="class in org.openscience.cdk.io.formats">MOPAC2012Format</a></li>
<li><a href="org/openscience/cdk/io/formats/MOPAC7Format.html" title="class in org.openscience.cdk.io.formats">MOPAC7Format</a></li>
<li><a href="org/openscience/cdk/io/formats/MOPAC7InputFormat.html" title="class in org.openscience.cdk.io.formats">MOPAC7InputFormat</a></li>
<li><a href="org/openscience/cdk/io/Mopac7Reader.html" title="class in org.openscience.cdk.io">Mopac7Reader</a></li>
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<li><a href="org/openscience/cdk/renderer/RendererModel.html" title="class in org.openscience.cdk.renderer">RendererModel</a></li>
<li><a href="org/openscience/cdk/renderer/RendererModel.ColorHash.html" title="class in org.openscience.cdk.renderer">RendererModel.ColorHash</a></li>
<li><a href="org/openscience/cdk/renderer/RendererModel.ExternalHighlightColor.html" title="class in org.openscience.cdk.renderer">RendererModel.ExternalHighlightColor</a></li>
<li><a href="org/openscience/cdk/renderer/RendererModel.SelectionColor.html" title="class in org.openscience.cdk.renderer">RendererModel.SelectionColor</a></li>
<li><a href="org/openscience/cdk/libio/md/Residue.html" title="class in org.openscience.cdk.libio.md">Residue</a></li>
<li><a href="org/openscience/cdk/isomorphism/mcss/RGraph.html" title="class in org.openscience.cdk.isomorphism.mcss">RGraph</a></li>
<li><a href="org/openscience/cdk/isomorphism/matchers/RGroup.html" title="class in org.openscience.cdk.isomorphism.matchers">RGroup</a></li>
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<li><a href="org/openscience/cdk/tools/SaturationChecker.html" title="class in org.openscience.cdk.tools">SaturationChecker</a></li>
<li><a href="org/openscience/cdk/io/formats/SDFFormat.html" title="class in org.openscience.cdk.io.formats">SDFFormat</a></li>
<li><a href="org/openscience/cdk/io/SDFWriter.html" title="class in org.openscience.cdk.io">SDFWriter</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/SelectionVisibility.html" title="class in org.openscience.cdk.renderer.generators.standard">SelectionVisibility</a></li>
<li><a href="org/openscience/cdk/reaction/type/parameters/SetReactionCenter.html" title="class in org.openscience.cdk.reaction.type.parameters">SetReactionCenter</a></li>
<li><a href="org/openscience/cdk/io/setting/SettingManager.html" title="class in org.openscience.cdk.io.setting">SettingManager</a></li>
<li><a href="org/openscience/cdk/reaction/type/SharingAnionReaction.html" title="class in org.openscience.cdk.reaction.type">SharingAnionReaction</a></li>
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<li><a href="org/openscience/cdk/ringsearch/SSSRFinder.html" title="class in org.openscience.cdk.ringsearch">SSSRFinder</a></li>
<li><a href="org/openscience/cdk/charges/StabilizationCharges.html" title="class in org.openscience.cdk.charges">StabilizationCharges</a></li>
<li><a href="org/openscience/cdk/qsar/descriptors/atomic/StabilizationPlusChargeDescriptor.html" title="class in org.openscience.cdk.qsar.descriptors.atomic">StabilizationPlusChargeDescriptor</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.AnnotationColor.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.AnnotationColor</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.AnnotationDistance.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.AnnotationDistance</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.AnnotationFontScale.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.AnnotationFontScale</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.AtomColor.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.AtomColor</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.BondSeparation.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.BondSeparation</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.DashSection.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.DashSection</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.FancyBoldWedges.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.FancyBoldWedges</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.FancyHashedWedges.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.FancyHashedWedges</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.HashSpacing.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.HashSpacing</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.Highlighting.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.Highlighting</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.HighlightStyle.html" title="enum in org.openscience.cdk.renderer.generators.standard">StandardGenerator.HighlightStyle</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.OuterGlowWidth.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.OuterGlowWidth</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.StrokeRatio.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.StrokeRatio</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.SymbolMarginRatio.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.SymbolMarginRatio</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.Visibility.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.Visibility</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.WaveSpacing.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.WaveSpacing</a></li>
<li><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.WedgeRatio.html" title="class in org.openscience.cdk.renderer.generators.standard">StandardGenerator.WedgeRatio</a></li>
<li><a href="org/openscience/cdk/fingerprint/StandardSubstructureSets.html" title="class in org.openscience.cdk.fingerprint">StandardSubstructureSets</a></li>
<li><a href="org/openscience/cdk/isomorphism/matchers/smarts/StereoBond.html" title="class in org.openscience.cdk.isomorphism.matchers.smarts">StereoBond</a></li>
<li><a href="org/openscience/cdk/isomorphism/matchers/smarts/StereoBond.Direction.html" title="enum in org.openscience.cdk.isomorphism.matchers.smarts">StereoBond.Direction</a></li>
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<li><a href="org/openscience/cdk/atomtype/StructGenMatcher.html" title="class in org.openscience.cdk.atomtype">StructGenMatcher</a></li>
<li><a href="org/openscience/cdk/layout/StructureDiagramGenerator.html" title="class in org.openscience.cdk.layout">StructureDiagramGenerator</a></li>
<li><a href="org/openscience/cdk/tools/StructureResonanceGenerator.html" title="class in org.openscience.cdk.tools">StructureResonanceGenerator</a></li>
<li><a href="org/openscience/cdk/silent/Substance.html" title="class in org.openscience.cdk.silent">Substance</a></li>
<li><a href="org/openscience/cdk/Substance.html" title="class in org.openscience.cdk">Substance</a></li>
<li><a href="org/openscience/cdk/fingerprint/SubstructureFingerprinter.html" title="class in org.openscience.cdk.fingerprint">SubstructureFingerprinter</a></li>
<li><a href="org/openscience/cdk/io/formats/SVGFormat.html" title="class in org.openscience.cdk.io.formats">SVGFormat</a></li>
<li><a href="org/openscience/cdk/controller/SwingEventRelay.html" title="class in org.openscience.cdk.controller">SwingEventRelay</a></li>
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<li><a href="org/openscience/cdk/isomorphism/matchers/SymbolChargeIDQueryAtom.html" title="class in org.openscience.cdk.isomorphism.matchers">SymbolChargeIDQueryAtom</a></li>
<li><a href="org/openscience/cdk/isomorphism/matchers/SymbolQueryAtom.html" title="class in org.openscience.cdk.isomorphism.matchers">SymbolQueryAtom</a></li>
<li><a href="org/openscience/cdk/isomorphism/matchers/SymbolSetQueryAtom.html" title="class in org.openscience.cdk.isomorphism.matchers">SymbolSetQueryAtom</a></li>
<li><a href="org/openscience/cdk/renderer/SymbolVisibility.html" title="class in org.openscience.cdk.renderer">SymbolVisibility</a></li>
<li><a href="org/openscience/cdk/tools/SystemOutLoggingTool.html" title="class in org.openscience.cdk.tools">SystemOutLoggingTool</a></li>
<li><a href="org/openscience/cdk/qsar/descriptors/protein/TaeAminoAcidDescriptor.html" title="class in org.openscience.cdk.qsar.descriptors.protein">TaeAminoAcidDescriptor</a></li>
<li><a href="org/openscience/cdk/similarity/Tanimoto.html" title="class in org.openscience.cdk.similarity">Tanimoto</a></li>
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<li><a href="org/openscience/cdk/isomorphism/Ullmann.html" title="class in org.openscience.cdk.isomorphism">Ullmann</a></li>
<li><a href="org/openscience/cdk/controller/UndoAdapter.html" title="class in org.openscience.cdk.controller">UndoAdapter</a></li>
<li><a href="org/openscience/cdk/io/formats/UniChemXYZFormat.html" title="class in org.openscience.cdk.io.formats">UniChemXYZFormat</a></li>
<li><a href="org/openscience/cdk/renderer/color/UniColor.html" title="class in org.openscience.cdk.renderer.color">UniColor</a></li>
<li><a href="org/openscience/cdk/isomorphism/UniversalIsomorphismTester.html" title="class in org.openscience.cdk.isomorphism">UniversalIsomorphismTester</a></li>
<li><a href="org/openscience/cdk/exception/UnsupportedChemObjectException.html" title="class in org.openscience.cdk.exception">UnsupportedChemObjectException</a></li>
<li><a href="org/openscience/cdk/qsar/descriptors/molecular/VABCDescriptor.html" title="class in org.openscience.cdk.qsar.descriptors.molecular">VABCDescriptor</a></li>
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43 changes: 39 additions & 4 deletions 1.5/docs/api/constant-values.html
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<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_21) on Thu Jul 17 15:12:52 BST 2014 -->
<!-- Generated by javadoc (version 1.7.0_67) on Wed Sep 10 14:45:55 BST 2014 -->
<meta http-equiv="Content-Type" content="text/html" charset="UTF-8">
<title>Constant Field Values (cdk 1.5.7 API)</title>
<meta name="date" content="2014-07-17">
<title>Constant Field Values (cdk 1.5.8 API)</title>
<meta name="date" content="2014-09-10">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
</head>
<body>
<script type="text/javascript"><!--
if (location.href.indexOf('is-external=true') == -1) {
parent.document.title="Constant Field Values (cdk 1.5.7 API)";
parent.document.title="Constant Field Values (cdk 1.5.8 API)";
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<ul class="blockList">
<li class="blockList">
<table border="0" cellpadding="3" cellspacing="0" summary="Constant Field Values table, listing constant fields, and values">
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<tr>
<th class="colFirst" scope="col">Modifier and Type</th>
<th scope="col">Constant Field</th>
<th class="colLast" scope="col">Value</th>
</tr>
<tbody>
<tr class="altColor">
<td class="colFirst"><a name="org.openscience.cdk.renderer.generators.standard.StandardGenerator.ANNOTATION_LABEL">
<!-- -->
</a><code>public&nbsp;static&nbsp;final&nbsp;<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a></code></td>
<td><code><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.html#ANNOTATION_LABEL">ANNOTATION_LABEL</a></code></td>
<td class="colLast"><code>"stdgen.annotation.label"</code></td>
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<tr class="rowColor">
<td class="colFirst"><a name="org.openscience.cdk.renderer.generators.standard.StandardGenerator.HIGHLIGHT_COLOR">
<!-- -->
</a><code>public&nbsp;static&nbsp;final&nbsp;<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a></code></td>
<td><code><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.html#HIGHLIGHT_COLOR">HIGHLIGHT_COLOR</a></code></td>
<td class="colLast"><code>"stdgen.highlight.color"</code></td>
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<td><code><a href="org/openscience/cdk/renderer/generators/standard/StandardGenerator.html#ITALIC_DISPLAY_PREFIX">ITALIC_DISPLAY_PREFIX</a></code></td>
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<tr>
<th class="colFirst" scope="col">Modifier and Type</th>
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