Allow header size to be less than content.

* Added TODO for defining process in wiki
bioclipse · Jan 9, 2012 · 183a837 · 183a837
1 parent c738772
commit 183a837
Showing 1 changed file with 7 additions and 6 deletions.
diff --git a/plugins/net.bioclipse.cdk.ui/src/net/bioclipse/cdk/ui/handlers/ConvertSMILEStoSDF.java b/plugins/net.bioclipse.cdk.ui/src/net/bioclipse/cdk/ui/handlers/ConvertSMILEStoSDF.java
@@ -205,11 +205,12 @@ public static List<ICDKMolecule> readFileIntoMoleculeList(
 				String[] parts = line.split(separator);
 
 				//Assert header is same size as data
-				if (parts.length!=headers.length)
-					throw new BioclipseException("Header and data have " +
-							"different number of columns. " +
-							"Header size=" + headers.length + 
-							"Line " + lineno + " size=" + parts.length );
+//				if (parts.length!=headers.length)
+//					throw new BioclipseException("Header and data have " +
+//							"different number of columns. " +
+//							"Header size=" + headers.length + 
+//							"Line " + lineno + " size=" + parts.length );
+				//TODO: We allow this for now, this needs to be defined in wiki how we handle
 
 				//Part 1 is expected to be SMILES
 				String smiles=parts[0];
@@ -250,7 +251,7 @@ public static List<ICDKMolecule> readFileIntoMoleculeList(
 
 
 				//Store rest of parts as properties on mol
-				for (int i=1; i<headers.length;i++){
+				for (int i=1; i<parts.length;i++){
 					mol.getAtomContainer().setProperty(headers[i], parts[i]);
 				}