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Item13335: apply .spec files when saving configuration
Previously, .spec files would only be applied during bootstrapping. This means that when users install extensions after bootstrapping, it is difficult to apply the extension's Config.spec file. In order to make this work, the order in which Foswiki::Configure::Load reads the files needed to change: previously, Config.spec files were applied after applying LocalSite.cfg, thus overriding the values stored there. The new code loads the files in the following order: Foswiki.spec, Config.spec files, LocalSite.cfg.
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