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Add BC-R help pages - TOC and About
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Valentin Georgiev committed Mar 16, 2012
1 parent bc61741 commit 048b851
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Showing 5 changed files with 64 additions and 1 deletion.
3 changes: 2 additions & 1 deletion plugins/net.bioclipse.r.ui/META-INF/MANIFEST.MF
Expand Up @@ -16,7 +16,8 @@ Require-Bundle: org.eclipse.core.runtime,
org.eclipse.jface.text,
org.eclipse.ui.editors,
org.eclipse.ui.ide,
org.eclipse.core.resources
org.eclipse.core.resources,
org.eclipse.help
Bundle-ActivationPolicy: lazy
Export-Package: net.bioclipse.r.ui,
net.bioclipse.r.ui.views
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38 changes: 38 additions & 0 deletions plugins/net.bioclipse.r.ui/html/about.html
@@ -0,0 +1,38 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
<HTML>
<HEAD>
<META HTTP-EQUIV="CONTENT-TYPE" CONTENT="text/html; charset=utf-8">
<TITLE>Bioclipse-R - About</TITLE>
<link rel="stylesheet" href="../../PRODUCT_PLUGIN/narrow_book.css" type="text/css">
</HEAD>
<BODY LANG="en-US" DIR="LTR">
<h1>About Bioclipse-R</h1>

<img src="editor/images/overviewPage.png" width=400 align=right>

<h2>Overview</h2>

<p>
Bioclipse-R is a feature ( = set of plugins) that provides integration between Bioclipse and the statistical programming language <a href="http://www.r-project.org/">R</a>.
R is a free and open source software that runs on Windows, MacOS, and a wide variety of UNIX platforms and similar systems (including
FreeBSD and Linux). <br>
The Bioclipse-R feature contains a graphical R editor and an interactive R-console that allow for easy running R scripts,
snippets and commands, and for using the plotting capabilities of R.
</p>
<p>
If you use the Bioclipse-R feature in a scientific project, please cite:
</p>

Ola Spjuth, Valentin Georgiev, Lars Carlsson, Jonathan Alvarsson, Arvid Berg, Jarl E.S. Wikberg, and Martin Eklund<br>
<b>Bioclipse-R: Integrating management and visualization of life science data with statistical analysis</b><br>
<i>manuscript in preparation</i> xxxx, <b>x</b>:x

<p>
<br>
<h2>License</h2>
Bioclipse and the QSAR plugins are released under <a href="epl-v10.html">
Eclipse Public License (EPL)</a>.


</BODY>
</HTML>
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7 changes: 7 additions & 0 deletions plugins/net.bioclipse.r.ui/plugin.xml
Expand Up @@ -119,4 +119,11 @@
</action>
</viewContribution>
</extension>
<extension
point="org.eclipse.help.toc">
<toc
file="toc.xml"
primary="true">
</toc>
</extension>
</plugin>
17 changes: 17 additions & 0 deletions plugins/net.bioclipse.r.ui/toc.xml
@@ -0,0 +1,17 @@
<?xml version="1.0" encoding="UTF-8"?>
<?NLS TYPE="org.eclipse.help.toc"?>

<toc label="Bioclipse-R">
<topic label="About Bioclipse-R" href="html/about.html"/>
<topic label="Installation" href="html/installation.html"/>
<topic label="User guide" >
<topic label="R console" href="html/rconsole.html" />
<topic label="R Editor">
<topic label="Overview Page" href="html/editor/overviewPage.html" />
</topic>
<topic label="Running R code" href="html/runningr.html" />
<topic label="R sessions" href="html/sessions.html" />
<topic label="Preferences" href="html/prefs.html" />

</topic>
</toc>

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