Updated for an API change in loadMolecule() now taking an error handler

bioclipse · Nov 6, 2011 · 8077cdc · 8077cdc
1 parent 62b0415
commit 8077cdc
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/plugins/net.bioclipse.oscar/META-INF/MANIFEST.MF b/plugins/net.bioclipse.oscar/META-INF/MANIFEST.MF
@@ -15,7 +15,8 @@ Require-Bundle: org.eclipse.ui,
  org.springframework.osgi.aopalliance.osgi,
  net.bioclipse.cdk.business;bundle-version="2.5.0",
  org.openscience.cdk.ioformats;bundle-version="1.3.8",
- org.eclipse.core.resources;bundle-version="3.6.1"
+ org.eclipse.core.resources;bundle-version="3.6.1",
+ org.openscience.cdk.io;bundle-version="1.3.8"
 Bundle-RequiredExecutionEnvironment: JavaSE-1.6
 Import-Package: org.apache.log4j
 Bundle-ActivationPolicy: lazy

diff --git a/plugins/net.bioclipse.oscar/src/net/bioclipse/oscar/business/OscarManager.java b/plugins/net.bioclipse.oscar/src/net/bioclipse/oscar/business/OscarManager.java
@@ -67,7 +67,7 @@ public List<IMolecule> findResolvedNamedEntities(String text) {
 					mol = cdk.loadMolecule(
 						new ByteArrayInputStream(
 							structure.getValue().getBytes()
-						), (IChemFormat)CMLFormat.getInstance(), null
+						), (IChemFormat)CMLFormat.getInstance(), null, null
 					);
 	    		    mols.add(mol);
 				} catch (BioclipseException e) {