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Merge pull request #3 from KlasJoenssson/UpdateCheatSheet
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Update cheat sheet
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@jonalv
jonalv committed Mar 8, 2012
2 parents 59d4c8f + 0682fe2 commit e27ad5a
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Showing 2 changed files with 10 additions and 8 deletions.
9 changes: 5 additions & 4 deletions plugins/net.bioclipse.ds.r.u251/cheatsheets/gettingstarted.xml
View file
Expand Up @@ -5,7 +5,7 @@
href="/net.bioclipse.ds/html/maintopic.html">
<description>
<b>Decision Support</b>
This tutorial describes the basic steps for using the Decision Support feature of Bioclipse.
This tutorial describes the basic steps for using the Decision Support feature of Bioclipse. For this tutorial it is good, but not necessary, to have Sample Data installed.
</description>
</intro>

Expand All @@ -30,7 +30,8 @@ In the top menu, select option <b>Window &gt; Open Perspective &gt; Other...</b>
class="net.bioclipse.scripting.ui.actions.ScriptAction"
required="false"
param1="mol=cdk.fromSMILES(&quot;CCCCON=O&quot;)"
param2="ui.open(mol)"
param2="mol=cdk.generate2dCoordinates(mol)"
param3="ui.open(mol)"
/>
</item>
<item
Expand All @@ -52,7 +53,7 @@ In the top menu, select option <b>Window &gt; Open Perspective &gt; Other...</b>
<item
title="Step 5: Generate a report">
<description>
By right clicking in the Decision Support tab it is possible to generate a Report. Note that it takes over 20 seconds to open the first report, while efter this generating reports is much faster.
By right clicking in the Decision Support tab it is possible to generate a Report. Note that it takes over 20 seconds to open the first report, while after this generating reports is much faster.
</description>
<action
pluginId="net.bioclipse.ds"
Expand Down Expand Up @@ -84,7 +85,7 @@ In the top menu, select option <b>Window &gt; Open Perspective &gt; Other...</b>
<item
title="Step 8: Switch between tabs in the Molecules Table">
<description>
Select one of the structures in the MoleculesTable and then click the tab <b>2D-structure</b> at the bottom of the editor. Here you can run individual tests, make changes to the molecule, and when you switch back to the tab <b>Molecules</b> the updated values are calculated in teh background and the visualization is updated (just wait a few seconds for it to complete).
Select one of the structures in the MoleculesTable and then click the tab <b>Single molecule</b> at the bottom of the editor. Here you can run individual tests, make changes to the molecule, and when you switch back to the tab <b>Molecules</b> the updated values are calculated in the background and the visualization is updated (just wait a few seconds for it to complete).
</description>
</item>
<item
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9 changes: 5 additions & 4 deletions plugins/net.bioclipse.ds.ui/cheatsheets/gettingstarted.xml
View file
Expand Up @@ -5,7 +5,7 @@
href="/net.bioclipse.ds/html/maintopic.html">
<description>
<b>Decision Support</b>
This tutorial describes the basic steps for using the Decision Support feature of Bioclipse.
This tutorial describes the basic steps for using the Decision Support feature of Bioclipse. For this tutorial it is good, but not necessary, to have Sample Data installed.
</description>
</intro>

Expand All @@ -30,7 +30,8 @@ In the top menu, select option <b>Window &gt; Open Perspective &gt; Other...</b>
class="net.bioclipse.scripting.ui.actions.ScriptAction"
required="false"
param1="mol=cdk.fromSMILES(&quot;CCCCON=O&quot;)"
param2="ui.open(mol)"
param2="mol=cdk.generate2dCoordinates(mol)"
param3="ui.open(mol)"
/>
</item>
<item
Expand All @@ -52,7 +53,7 @@ In the top menu, select option <b>Window &gt; Open Perspective &gt; Other...</b>
<item
title="Step 5: Generate a report">
<description>
By right clicking in the Decision Support tab it is possible to generate a Report. Note that it takes over 20 seconds to open the first report, while efter this generating reports is much faster.
By right clicking in the Decision Support tab it is possible to generate a Report. Note that it takes over 20 seconds to open the first report, while after this generating reports is much faster.
</description>
<action
pluginId="net.bioclipse.ds.ui"
Expand Down Expand Up @@ -84,7 +85,7 @@ In the top menu, select option <b>Window &gt; Open Perspective &gt; Other...</b>
<item
title="Step 8: Switch between tabs in the Molecules Table">
<description>
Select one of the structures in the MoleculesTable and then click the tab <b>2D-structure</b> at the bottom of the editor. Here you can run individual tests, make changes to the molecule, and when you switch back to the tab <b>Molecules</b> the updated values are calculated in teh background and the visualization is updated (just wait a few seconds for it to complete).
Select one of the structures in the MoleculesTable and then click the tab <b>Single molecule</b> at the bottom of the editor. Here you can run individual tests, make changes to the molecule, and when you switch back to the tab <b>Molecules</b> the updated values are calculated in the background and the visualization is updated (just wait a few seconds for it to complete).
</description>
</item>
<item
Expand Down

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