Small debugging entries

bioclipse · Jul 10, 2012 · 85d3923 · 85d3923
1 parent 43faba5
commit 85d3923
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Showing 2 changed files with 5 additions and 2 deletions.
diff --git a/plugins/net.bioclipse.ds.r/src/net/bioclipse/ds/r/DenseCDKRModelMatcher.java b/plugins/net.bioclipse.ds.r/src/net/bioclipse/ds/r/DenseCDKRModelMatcher.java
@@ -79,8 +79,9 @@ protected List<? extends ITestResult> doRunTest(ICDKMolecule cdkmol,
 
         //Make room for results
         List<ITestResult> results=new ArrayList<ITestResult>();
-        
+
         if (requires3d){
+        	logger.debug("Calculating 3D coordinates for " + getName() + " since requires 3D");
         	monitor.subTask("Calculating 3D coordinates");
         	IBalloonManager balloon = net.bioclipse.balloon.business.
         							  Activator.getDefault().getJavaBalloonManager();
@@ -92,7 +93,7 @@ protected List<? extends ITestResult> doRunTest(ICDKMolecule cdkmol,
 				return returnError("Error generating 3D", e.getMessage());
 			}
         }
-
+                
         List<IMolecule> mols = new ArrayList<IMolecule>();
         mols.add(cdkmol);
 
@@ -195,6 +196,7 @@ public List<String> readLinesFromFile(String path) throws DSException {
     }
 
 
+
 	/**
 	 * Get a list of the row names from the R data model.
 	 * @param tempvar

diff --git a/plugins/net.bioclipse.ds.ui/src/net/bioclipse/ds/ui/views/DSView.java b/plugins/net.bioclipse.ds.ui/src/net/bioclipse/ds/ui/views/DSView.java
@@ -340,6 +340,7 @@ protected IStatus run( IProgressMonitor monitor ) {
                 for (String testID : ds.getTests()){
                 	IDSTest test = ds.getTest( testID );
                 	monitor.subTask( "Initializing test: " + testID );
+                	logger.debug( "Initializing test: " + testID );
                 	try {
                 		if (!test.isInitialized()){
                 			test.initialize( monitor );