fix ppwm example and add option to check to run just a few examples

shogun-toolbox · Aug 28, 2011 · a74aaf0 · a74aaf0
1 parent 0deb8ca
commit a74aaf0
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Showing 2 changed files with 7 additions and 2 deletions.
diff --git a/examples/undocumented/java_modular/check.sh b/examples/undocumented/java_modular/check.sh
@@ -13,7 +13,11 @@ export LD_LIBRARY_PATH=../../../src/shogun:../../../src/interfaces/java_modular
 
 ${JAVAC} Load.java
 
-for e in $(ls *.java | grep -v Load.java)
+FILES=$@
+
+test -z "$FILES" && FILES=$(ls *.java | grep -v Load.cs )
+
+for e in $FILES
 do
 	echo -n "running $e .."
 	if ${JAVAC} $e >/dev/null 2>&1 && ${JAVA} ${e%.java} >/dev/null 2>&1

diff --git a/examples/undocumented/java_modular/distribution_ppwm_modular.java b/examples/undocumented/java_modular/distribution_ppwm_modular.java
@@ -1,5 +1,6 @@
 import org.shogun.*;
 import org.jblas.*;
+import static org.jblas.MatrixFunctions.logi;
 import static org.shogun.EAlphabet.DNA;
 import java.util.ArrayList;
 import java.util.Arrays;
@@ -29,7 +30,7 @@ public static void main(String argv[]) {
 							{0.0, 0.5, 0.5, 0.0},
 							{1.0, 0.0, 0.4, 0.0},
 							{0.0, 0.0, 0.0, 0.0}});
-		//ppwm.set_pwm(DoubleMatrix.log(pwm));
+		ppwm.set_pwm(logi(pwm));
 		ppwm.compute_w(20);
 		DoubleMatrix w = ppwm.get_w();
 		modshogun.exit_shogun();