Added removal of stereo elements in 'removeAllElements()' - documenta…

…tion has been updated Change-Id: I02bd4d114e918c5aaabd881546c29afae55d6800 Signed-off-by: Egon Willighagen <egonw@users.sourceforge.net>
cdk · Nov 2, 2012 · d1e8fa6 · d1e8fa6
1 parent f8f98fe
commit d1e8fa6
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Showing 3 changed files with 7 additions and 3 deletions.
diff --git a/src/main/org/openscience/cdk/AtomContainer.java b/src/main/org/openscience/cdk/AtomContainer.java
@@ -1329,15 +1329,17 @@ public void removeAtomAndConnectedElectronContainers(IAtom atom)
 	}
 
 	/**
-	 * Removes all atoms and bond from this container.
+	 * @inheritDoc
 	 */
+    @Override
 	public void removeAllElements() {
 		removeAllElectronContainers();
         for (int f = 0; f < getAtomCount(); f++) {
 			getAtom(f).removeListener(this);	
 		}
         atoms = new IAtom[growArraySize];
         atomCount = 0;
+        stereoElements.clear();
 		notifyChanged();
 	}
 

diff --git a/src/main/org/openscience/cdk/interfaces/IAtomContainer.java b/src/main/org/openscience/cdk/interfaces/IAtomContainer.java
@@ -538,7 +538,7 @@ public interface IAtomContainer extends IChemObject, IChemObjectListener {
 	public void removeAtomAndConnectedElectronContainers(IAtom atom);
 
 	/**
-	 * Removes all atoms and bond from this container.
+	 * Removes all atoms, bonds and stereo elements from this container.
 	 */
 	public void removeAllElements();
 

diff --git a/src/main/org/openscience/cdk/silent/AtomContainer.java b/src/main/org/openscience/cdk/silent/AtomContainer.java
@@ -1293,12 +1293,14 @@ public void removeAtomAndConnectedElectronContainers(IAtom atom)
 	}
 
 	/**
-	 * Removes all atoms and bond from this container.
+	 * @inheritDoc
 	 */
+    @Override
 	public void removeAllElements() {
 		removeAllElectronContainers();
         atoms = new IAtom[growArraySize];
         atomCount = 0;
+        stereoElements.clear();
 	}