Updated ds help

bioclipse · Sep 7, 2012 · ec3c2e3 · ec3c2e3
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diff --git a/plugins/net.bioclipse.ds.common/html/structAlertSMARTS.html b/plugins/net.bioclipse.ds.common/html/structAlertSMARTS.html
@@ -3,12 +3,12 @@
 <html>
 <head>
 	<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-	<title>Structural Alerts SMARTS</title>
+	<title>SMARTS Structural Alerts</title>
   <link rel="stylesheet" href="../../PRODUCT_PLUGIN/narrow_book.css" type="text/css">
 </head>
 
 <body>
-<h1>Structural Alerts SMARTS</h1>
+<h1>SMARTS Structural Alerts</h1>
 This model evaluates a query compound against a set of structural alerts 
 (also known as toxicophores), implemented as SMARTS [1]. 
 The model makes use of the Chemistry Development Kit for SMARTS querying [2-3]. 

diff --git a/plugins/net.bioclipse.ds.common/html/structAlertSignatures.html b/plugins/net.bioclipse.ds.common/html/structAlertSignatures.html
@@ -3,21 +3,21 @@
 <html>
 <head>
 	<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-	<title>Structural Alerts Signatures</title>
+	<title>Signatures Structural Alerts</title>
   <link rel="stylesheet" href="../../PRODUCT_PLUGIN/narrow_book.css" type="text/css">
 </head>
 
 <body>
-<h1>Structural Alerts Signatures</h1>
+<h1>Signatures Structural Alerts</h1>
 This model evaluates a query compound against a set of structural alerts 
-(also known as toxicophores), implemented as Signatures.
+(also known as toxicophores), implemented as Signatures [1].
 In case one of the structural alerts identifies a substructure, 
 this is returned as a POSITIVE result for the model.
 
 
 <p><h2>References</h2><p>
 
-J.-L. Faulon, M. J. Collins, and R. D. Carr <br>
+[1] J.-L. Faulon, M. J. Collins, and R. D. Carr <br>
 The signature molecular descriptor. 4. canonizing molecules using extended valence sequences. <br>
 <i>J Chem Inf Comput Sci</i>, 44(2):427-436, Mar-Apr 2004.<br>
 

diff --git a/plugins/net.bioclipse.ds.common/toc.xml b/plugins/net.bioclipse.ds.common/toc.xml
@@ -1,12 +1,12 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <?NLS TYPE="org.eclipse.help.toc"?>
 
-<toc link_to="../net.bioclipse.ds.ui/toc.xml#ContributedModels" label="Models" >
+<toc link_to="../net.bioclipse.ds.ui/toc.xml#ContributedModelImplementations" label="Models" >
 			<topic label="Exact Match InChI"  href="html/exactInchi.html" /> 
 			<topic label="Exact Match Signatures"  href="html/exactMolSign.html" /> 
 			<topic label="Exact Match CDK Fingerprint"  href="html/exactFP.html" /> 
 
 			<topic label="Nearest Neighbour CDK Fingerprint"  href="html/nearestFP.html" /> 
-			<topic label="Structural Alerts SMARTS"  href="html/structAlertSMARTS.html" />
-		    <topic label="Structural Signatures Signatures"  href="html/structAlertSignatures.html" /> 
-</toc>
+			<topic label="SMARTS Structural Alerts"  href="html/structAlertSMARTS.html" />
+		    <topic label="Signatures Structural Alerts"  href="html/structAlertSignatures.html" /> 
+</toc>
diff --git a/plugins/net.bioclipse.ds.ui/toc.xml b/plugins/net.bioclipse.ds.ui/toc.xml
@@ -6,8 +6,8 @@
 	<topic label="Endpoints"> 
 		<anchor id="ContributedEndpoints" />
 	</topic>
-	<topic label="Models"> 
-		<anchor id="ContributedModels" />
+	<topic label="Model implementations"> 
+		<anchor id="ContributedModelImplementations" />
 	</topic>
 	<topic label="Users Guide"  href="html/usersguide.html" /> 
 </toc>