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Javdoc for 1.5.6
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@johnmay
johnmay committed Apr 27, 2014
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16 changes: 11 additions & 5 deletions 1.5/docs/api/allclasses-frame.html
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<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_21) on Fri Jan 24 20:00:39 GMT 2014 -->
<title>All Classes (CDK 1.5.5 API - created on 20140124)</title>
<meta name="date" content="2014-01-24">
<!-- Generated by javadoc (version 1.7.0_21) on Sun Apr 27 11:16:20 BST 2014 -->
<meta http-equiv="Content-Type" content="text/html" charset="UTF-8">
<title>All Classes (cdk 1.5.6 API)</title>
<meta name="date" content="2014-04-27">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
</head>
<body>
Expand Down Expand Up @@ -243,7 +244,6 @@ <h1 class="bar">All Classes</h1>
<li><a href="org/openscience/cdk/io/formats/CDKOWLFormat.html" title="class in org.openscience.cdk.io.formats" target="classFrame">CDKOWLFormat</a></li>
<li><a href="org/openscience/cdk/io/rdf/CDKOWLReader.html" title="class in org.openscience.cdk.io.rdf" target="classFrame">CDKOWLReader</a></li>
<li><a href="org/openscience/cdk/io/rdf/CDKOWLWriter.html" title="class in org.openscience.cdk.io.rdf" target="classFrame">CDKOWLWriter</a></li>
<li><a href="org/openscience/cdk/controller/CDKPopupMenu.html" title="class in org.openscience.cdk.controller" target="classFrame">CDKPopupMenu</a></li>
<li><a href="org/openscience/cdk/smsd/algorithm/rgraph/CDKRGraph.html" title="class in org.openscience.cdk.smsd.algorithm.rgraph" target="classFrame">CDKRGraph</a></li>
<li><a href="org/openscience/cdk/smsd/algorithm/rgraph/CDKRMap.html" title="class in org.openscience.cdk.smsd.algorithm.rgraph" target="classFrame">CDKRMap</a></li>
<li><a href="org/openscience/cdk/smsd/algorithm/rgraph/CDKRMapHandler.html" title="class in org.openscience.cdk.smsd.algorithm.rgraph" target="classFrame">CDKRMapHandler</a></li>
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<li><a href="org/openscience/cdk/geometry/cip/rules/CIPLigandRule.html" title="class in org.openscience.cdk.geometry.cip.rules" target="classFrame">CIPLigandRule</a></li>
<li><a href="org/openscience/cdk/geometry/cip/CIPTool.html" title="class in org.openscience.cdk.geometry.cip" target="classFrame">CIPTool</a></li>
<li><a href="org/openscience/cdk/geometry/cip/CIPTool.CIP_CHIRALITY.html" title="enum in org.openscience.cdk.geometry.cip" target="classFrame">CIPTool.CIP_CHIRALITY</a></li>
<li><a href="org/openscience/cdk/fingerprint/CircularFingerprinter.html" title="class in org.openscience.cdk.fingerprint" target="classFrame">CircularFingerprinter</a></li>
<li><a href="org/openscience/cdk/fingerprint/CircularFingerprinter.FP.html" title="class in org.openscience.cdk.fingerprint" target="classFrame">CircularFingerprinter.FP</a></li>
<li><a href="org/openscience/cdk/renderer/elements/path/Close.html" title="class in org.openscience.cdk.renderer.elements.path" target="classFrame">Close</a></li>
<li><a href="org/openscience/cdk/math/qm/ClosedShellJob.html" title="class in org.openscience.cdk.math.qm" target="classFrame">ClosedShellJob</a></li>
<li><a href="org/openscience/cdk/io/cml/CMLCoreModule.html" title="class in org.openscience.cdk.io.cml" target="classFrame">CMLCoreModule</a></li>
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<li><a href="org/openscience/cdk/DynamicFactory.ConstructorKey.html" title="class in org.openscience.cdk" target="classFrame">DynamicFactory.ConstructorKey</a></li>
<li><a href="org/openscience/cdk/DynamicFactory.CreationModifier.html" title="interface in org.openscience.cdk" target="classFrame"><i>DynamicFactory.CreationModifier</i></a></li>
<li><a href="org/openscience/cdk/DynamicFactory.Creator.html" title="interface in org.openscience.cdk" target="classFrame"><i>DynamicFactory.Creator</i></a></li>
<li><a href="org/openscience/cdk/DynamicFactory.DefaultInterfaceProvider.html" title="class in org.openscience.cdk" target="classFrame">DynamicFactory.DefaultInterfaceProvider</a></li>
<li><a href="org/openscience/cdk/DynamicFactory.InterfaceProvider.html" title="interface in org.openscience.cdk" target="classFrame"><i>DynamicFactory.InterfaceProvider</i></a></li>
<li><a href="org/openscience/cdk/qsar/descriptors/molecular/EccentricConnectivityIndexDescriptor.html" title="class in org.openscience.cdk.qsar.descriptors.molecular" target="classFrame">EccentricConnectivityIndexDescriptor</a></li>
<li><a href="org/openscience/cdk/smsd/algorithm/vflib/builder/EdgeBuilder.html" title="class in org.openscience.cdk.smsd.algorithm.vflib.builder" target="classFrame">EdgeBuilder</a></li>
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<li><a href="org/openscience/cdk/tools/FormatStringBuffer.html" title="class in org.openscience.cdk.tools" target="classFrame">FormatStringBuffer</a></li>
<li><a href="org/openscience/cdk/math/FortranFormat.html" title="class in org.openscience.cdk.math" target="classFrame">FortranFormat</a></li>
<li><a href="org/openscience/cdk/math/qm/FourierGridBasis.html" title="class in org.openscience.cdk.math.qm" target="classFrame">FourierGridBasis</a></li>
<li><a href="org/openscience/cdk/qsar/descriptors/molecular/FractionalPSADescriptor.html" title="class in org.openscience.cdk.qsar.descriptors.molecular" target="classFrame">FractionalPSADescriptor</a></li>
<li><a href="org/openscience/cdk/FragmentAtom.html" title="class in org.openscience.cdk" target="classFrame">FragmentAtom</a></li>
<li><a href="org/openscience/cdk/silent/FragmentAtom.html" title="class in org.openscience.cdk.silent" target="classFrame">FragmentAtom</a></li>
<li><a href="org/openscience/cdk/qsar/descriptors/molecular/FragmentComplexityDescriptor.html" title="class in org.openscience.cdk.qsar.descriptors.molecular" target="classFrame">FragmentComplexityDescriptor</a></li>
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<li><a href="org/openscience/cdk/controller/IViewEventRelay.html" title="interface in org.openscience.cdk.controller" target="classFrame"><i>IViewEventRelay</i></a></li>
<li><a href="org/openscience/cdk/io/listener/IWriterListener.html" title="interface in org.openscience.cdk.io.listener" target="classFrame"><i>IWriterListener</i></a></li>
<li><a href="org/openscience/cdk/io/formats/JaguarFormat.html" title="class in org.openscience.cdk.io.formats" target="classFrame">JaguarFormat</a></li>
<li><a href="org/openscience/cdk/renderer/JCPAction2D.html" title="class in org.openscience.cdk.renderer" target="classFrame">JCPAction2D</a></li>
<li><a href="org/openscience/cdk/smiles/smarts/parser/JJTSMARTSParserState.html" title="class in org.openscience.cdk.smiles.smarts.parser" target="classFrame">JJTSMARTSParserState</a></li>
<li><a href="org/openscience/cdk/io/formats/JMEFormat.html" title="class in org.openscience.cdk.io.formats" target="classFrame">JMEFormat</a></li>
<li><a href="org/openscience/cdk/io/cml/JMOLANIMATIONConvention.html" title="class in org.openscience.cdk.io.cml" target="classFrame">JMOLANIMATIONConvention</a></li>
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<li><a href="org/openscience/cdk/isomorphism/matchers/smarts/MassAtom.html" title="class in org.openscience.cdk.isomorphism.matchers.smarts" target="classFrame">MassAtom</a></li>
<li><a href="org/openscience/cdk/formula/MassToFormulaTool.html" title="class in org.openscience.cdk.formula" target="classFrame">MassToFormulaTool</a></li>
<li><a href="org/openscience/cdk/smsd/algorithm/vflib/map/Match.html" title="class in org.openscience.cdk.smsd.algorithm.vflib.map" target="classFrame">Match</a></li>
<li><a href="org/openscience/cdk/graph/Matching.html" title="class in org.openscience.cdk.graph" target="classFrame">Matching</a></li>
<li><a href="org/openscience/cdk/math/MathTools.html" title="class in org.openscience.cdk.math" target="classFrame">MathTools</a></li>
<li><a href="org/openscience/cdk/math/Matrix.html" title="class in org.openscience.cdk.math" target="classFrame">Matrix</a></li>
<li><a href="org/openscience/cdk/graph/invariant/exception/MatrixNotInvertibleException.html" title="class in org.openscience.cdk.graph.invariant.exception" target="classFrame">MatrixNotInvertibleException</a></li>
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<li><a href="org/openscience/cdk/smsd/algorithm/single/SingleMappingHandler.html" title="class in org.openscience.cdk.smsd.algorithm.single" target="classFrame">SingleMappingHandler</a></li>
<li><a href="org/openscience/cdk/structgen/SingleStructureRandomGenerator.html" title="class in org.openscience.cdk.structgen" target="classFrame">SingleStructureRandomGenerator</a></li>
<li><a href="org/openscience/cdk/isomorphism/matchers/smarts/SmallestRingAtom.html" title="class in org.openscience.cdk.isomorphism.matchers.smarts" target="classFrame">SmallestRingAtom</a></li>
<li><a href="org/openscience/cdk/qsar/descriptors/molecular/SmallRingDescriptor.html" title="class in org.openscience.cdk.qsar.descriptors.molecular" target="classFrame">SmallRingDescriptor</a></li>
<li><a href="org/openscience/cdk/smiles/smarts/parser/Smarts2MQLVisitor.html" title="class in org.openscience.cdk.smiles.smarts.parser" target="classFrame">Smarts2MQLVisitor</a></li>
<li><a href="org/openscience/cdk/isomorphism/matchers/smarts/SMARTSAtom.html" title="class in org.openscience.cdk.isomorphism.matchers.smarts" target="classFrame">SMARTSAtom</a></li>
<li><a href="org/openscience/cdk/isomorphism/matchers/smarts/SMARTSBond.html" title="class in org.openscience.cdk.isomorphism.matchers.smarts" target="classFrame">SMARTSBond</a></li>
Expand All @@ -1124,6 +1129,7 @@ <h1 class="bar">All Classes</h1>
<li><a href="org/openscience/cdk/smiles/smarts/parser/SMARTSParserTokenManager.html" title="class in org.openscience.cdk.smiles.smarts.parser" target="classFrame">SMARTSParserTokenManager</a></li>
<li><a href="org/openscience/cdk/smiles/smarts/parser/SMARTSParserTreeConstants.html" title="interface in org.openscience.cdk.smiles.smarts.parser" target="classFrame"><i>SMARTSParserTreeConstants</i></a></li>
<li><a href="org/openscience/cdk/smiles/smarts/parser/SMARTSParserVisitor.html" title="interface in org.openscience.cdk.smiles.smarts.parser" target="classFrame"><i>SMARTSParserVisitor</i></a></li>
<li><a href="org/openscience/cdk/smiles/smarts/SmartsPattern.html" title="class in org.openscience.cdk.smiles.smarts" target="classFrame">SmartsPattern</a></li>
<li><a href="org/openscience/cdk/smiles/smarts/SMARTSQueryTool.html" title="class in org.openscience.cdk.smiles.smarts" target="classFrame">SMARTSQueryTool</a></li>
<li><a href="org/openscience/cdk/smiles/smarts/parser/SmartsQueryVisitor.html" title="class in org.openscience.cdk.smiles.smarts.parser" target="classFrame">SmartsQueryVisitor</a></li>
<li><a href="org/openscience/cdk/isomorphism/SmartsStereoMatch.html" title="class in org.openscience.cdk.isomorphism" target="classFrame">SmartsStereoMatch</a></li>
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16 changes: 11 additions & 5 deletions 1.5/docs/api/allclasses-noframe.html
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Expand Up @@ -2,9 +2,10 @@
<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_21) on Fri Jan 24 20:00:39 GMT 2014 -->
<title>All Classes (CDK 1.5.5 API - created on 20140124)</title>
<meta name="date" content="2014-01-24">
<!-- Generated by javadoc (version 1.7.0_21) on Sun Apr 27 11:16:20 BST 2014 -->
<meta http-equiv="Content-Type" content="text/html" charset="UTF-8">
<title>All Classes (cdk 1.5.6 API)</title>
<meta name="date" content="2014-04-27">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
</head>
<body>
Expand Down Expand Up @@ -243,7 +244,6 @@ <h1 class="bar">All Classes</h1>
<li><a href="org/openscience/cdk/io/formats/CDKOWLFormat.html" title="class in org.openscience.cdk.io.formats">CDKOWLFormat</a></li>
<li><a href="org/openscience/cdk/io/rdf/CDKOWLReader.html" title="class in org.openscience.cdk.io.rdf">CDKOWLReader</a></li>
<li><a href="org/openscience/cdk/io/rdf/CDKOWLWriter.html" title="class in org.openscience.cdk.io.rdf">CDKOWLWriter</a></li>
<li><a href="org/openscience/cdk/controller/CDKPopupMenu.html" title="class in org.openscience.cdk.controller">CDKPopupMenu</a></li>
<li><a href="org/openscience/cdk/smsd/algorithm/rgraph/CDKRGraph.html" title="class in org.openscience.cdk.smsd.algorithm.rgraph">CDKRGraph</a></li>
<li><a href="org/openscience/cdk/smsd/algorithm/rgraph/CDKRMap.html" title="class in org.openscience.cdk.smsd.algorithm.rgraph">CDKRMap</a></li>
<li><a href="org/openscience/cdk/smsd/algorithm/rgraph/CDKRMapHandler.html" title="class in org.openscience.cdk.smsd.algorithm.rgraph">CDKRMapHandler</a></li>
Expand Down Expand Up @@ -288,6 +288,8 @@ <h1 class="bar">All Classes</h1>
<li><a href="org/openscience/cdk/geometry/cip/rules/CIPLigandRule.html" title="class in org.openscience.cdk.geometry.cip.rules">CIPLigandRule</a></li>
<li><a href="org/openscience/cdk/geometry/cip/CIPTool.html" title="class in org.openscience.cdk.geometry.cip">CIPTool</a></li>
<li><a href="org/openscience/cdk/geometry/cip/CIPTool.CIP_CHIRALITY.html" title="enum in org.openscience.cdk.geometry.cip">CIPTool.CIP_CHIRALITY</a></li>
<li><a href="org/openscience/cdk/fingerprint/CircularFingerprinter.html" title="class in org.openscience.cdk.fingerprint">CircularFingerprinter</a></li>
<li><a href="org/openscience/cdk/fingerprint/CircularFingerprinter.FP.html" title="class in org.openscience.cdk.fingerprint">CircularFingerprinter.FP</a></li>
<li><a href="org/openscience/cdk/renderer/elements/path/Close.html" title="class in org.openscience.cdk.renderer.elements.path">Close</a></li>
<li><a href="org/openscience/cdk/math/qm/ClosedShellJob.html" title="class in org.openscience.cdk.math.qm">ClosedShellJob</a></li>
<li><a href="org/openscience/cdk/io/cml/CMLCoreModule.html" title="class in org.openscience.cdk.io.cml">CMLCoreModule</a></li>
Expand Down Expand Up @@ -411,6 +413,7 @@ <h1 class="bar">All Classes</h1>
<li><a href="org/openscience/cdk/DynamicFactory.ConstructorKey.html" title="class in org.openscience.cdk">DynamicFactory.ConstructorKey</a></li>
<li><a href="org/openscience/cdk/DynamicFactory.CreationModifier.html" title="interface in org.openscience.cdk"><i>DynamicFactory.CreationModifier</i></a></li>
<li><a href="org/openscience/cdk/DynamicFactory.Creator.html" title="interface in org.openscience.cdk"><i>DynamicFactory.Creator</i></a></li>
<li><a href="org/openscience/cdk/DynamicFactory.DefaultInterfaceProvider.html" title="class in org.openscience.cdk">DynamicFactory.DefaultInterfaceProvider</a></li>
<li><a href="org/openscience/cdk/DynamicFactory.InterfaceProvider.html" title="interface in org.openscience.cdk"><i>DynamicFactory.InterfaceProvider</i></a></li>
<li><a href="org/openscience/cdk/qsar/descriptors/molecular/EccentricConnectivityIndexDescriptor.html" title="class in org.openscience.cdk.qsar.descriptors.molecular">EccentricConnectivityIndexDescriptor</a></li>
<li><a href="org/openscience/cdk/smsd/algorithm/vflib/builder/EdgeBuilder.html" title="class in org.openscience.cdk.smsd.algorithm.vflib.builder">EdgeBuilder</a></li>
Expand Down Expand Up @@ -463,6 +466,7 @@ <h1 class="bar">All Classes</h1>
<li><a href="org/openscience/cdk/tools/FormatStringBuffer.html" title="class in org.openscience.cdk.tools">FormatStringBuffer</a></li>
<li><a href="org/openscience/cdk/math/FortranFormat.html" title="class in org.openscience.cdk.math">FortranFormat</a></li>
<li><a href="org/openscience/cdk/math/qm/FourierGridBasis.html" title="class in org.openscience.cdk.math.qm">FourierGridBasis</a></li>
<li><a href="org/openscience/cdk/qsar/descriptors/molecular/FractionalPSADescriptor.html" title="class in org.openscience.cdk.qsar.descriptors.molecular">FractionalPSADescriptor</a></li>
<li><a href="org/openscience/cdk/FragmentAtom.html" title="class in org.openscience.cdk">FragmentAtom</a></li>
<li><a href="org/openscience/cdk/silent/FragmentAtom.html" title="class in org.openscience.cdk.silent">FragmentAtom</a></li>
<li><a href="org/openscience/cdk/qsar/descriptors/molecular/FragmentComplexityDescriptor.html" title="class in org.openscience.cdk.qsar.descriptors.molecular">FragmentComplexityDescriptor</a></li>
Expand Down Expand Up @@ -721,7 +725,6 @@ <h1 class="bar">All Classes</h1>
<li><a href="org/openscience/cdk/controller/IViewEventRelay.html" title="interface in org.openscience.cdk.controller"><i>IViewEventRelay</i></a></li>
<li><a href="org/openscience/cdk/io/listener/IWriterListener.html" title="interface in org.openscience.cdk.io.listener"><i>IWriterListener</i></a></li>
<li><a href="org/openscience/cdk/io/formats/JaguarFormat.html" title="class in org.openscience.cdk.io.formats">JaguarFormat</a></li>
<li><a href="org/openscience/cdk/renderer/JCPAction2D.html" title="class in org.openscience.cdk.renderer">JCPAction2D</a></li>
<li><a href="org/openscience/cdk/smiles/smarts/parser/JJTSMARTSParserState.html" title="class in org.openscience.cdk.smiles.smarts.parser">JJTSMARTSParserState</a></li>
<li><a href="org/openscience/cdk/io/formats/JMEFormat.html" title="class in org.openscience.cdk.io.formats">JMEFormat</a></li>
<li><a href="org/openscience/cdk/io/cml/JMOLANIMATIONConvention.html" title="class in org.openscience.cdk.io.cml">JMOLANIMATIONConvention</a></li>
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<li><a href="org/openscience/cdk/isomorphism/matchers/smarts/MassAtom.html" title="class in org.openscience.cdk.isomorphism.matchers.smarts">MassAtom</a></li>
<li><a href="org/openscience/cdk/formula/MassToFormulaTool.html" title="class in org.openscience.cdk.formula">MassToFormulaTool</a></li>
<li><a href="org/openscience/cdk/smsd/algorithm/vflib/map/Match.html" title="class in org.openscience.cdk.smsd.algorithm.vflib.map">Match</a></li>
<li><a href="org/openscience/cdk/graph/Matching.html" title="class in org.openscience.cdk.graph">Matching</a></li>
<li><a href="org/openscience/cdk/math/MathTools.html" title="class in org.openscience.cdk.math">MathTools</a></li>
<li><a href="org/openscience/cdk/math/Matrix.html" title="class in org.openscience.cdk.math">Matrix</a></li>
<li><a href="org/openscience/cdk/graph/invariant/exception/MatrixNotInvertibleException.html" title="class in org.openscience.cdk.graph.invariant.exception">MatrixNotInvertibleException</a></li>
Expand Down Expand Up @@ -1113,6 +1117,7 @@ <h1 class="bar">All Classes</h1>
<li><a href="org/openscience/cdk/smsd/algorithm/single/SingleMappingHandler.html" title="class in org.openscience.cdk.smsd.algorithm.single">SingleMappingHandler</a></li>
<li><a href="org/openscience/cdk/structgen/SingleStructureRandomGenerator.html" title="class in org.openscience.cdk.structgen">SingleStructureRandomGenerator</a></li>
<li><a href="org/openscience/cdk/isomorphism/matchers/smarts/SmallestRingAtom.html" title="class in org.openscience.cdk.isomorphism.matchers.smarts">SmallestRingAtom</a></li>
<li><a href="org/openscience/cdk/qsar/descriptors/molecular/SmallRingDescriptor.html" title="class in org.openscience.cdk.qsar.descriptors.molecular">SmallRingDescriptor</a></li>
<li><a href="org/openscience/cdk/smiles/smarts/parser/Smarts2MQLVisitor.html" title="class in org.openscience.cdk.smiles.smarts.parser">Smarts2MQLVisitor</a></li>
<li><a href="org/openscience/cdk/isomorphism/matchers/smarts/SMARTSAtom.html" title="class in org.openscience.cdk.isomorphism.matchers.smarts">SMARTSAtom</a></li>
<li><a href="org/openscience/cdk/isomorphism/matchers/smarts/SMARTSBond.html" title="class in org.openscience.cdk.isomorphism.matchers.smarts">SMARTSBond</a></li>
Expand All @@ -1124,6 +1129,7 @@ <h1 class="bar">All Classes</h1>
<li><a href="org/openscience/cdk/smiles/smarts/parser/SMARTSParserTokenManager.html" title="class in org.openscience.cdk.smiles.smarts.parser">SMARTSParserTokenManager</a></li>
<li><a href="org/openscience/cdk/smiles/smarts/parser/SMARTSParserTreeConstants.html" title="interface in org.openscience.cdk.smiles.smarts.parser"><i>SMARTSParserTreeConstants</i></a></li>
<li><a href="org/openscience/cdk/smiles/smarts/parser/SMARTSParserVisitor.html" title="interface in org.openscience.cdk.smiles.smarts.parser"><i>SMARTSParserVisitor</i></a></li>
<li><a href="org/openscience/cdk/smiles/smarts/SmartsPattern.html" title="class in org.openscience.cdk.smiles.smarts">SmartsPattern</a></li>
<li><a href="org/openscience/cdk/smiles/smarts/SMARTSQueryTool.html" title="class in org.openscience.cdk.smiles.smarts">SMARTSQueryTool</a></li>
<li><a href="org/openscience/cdk/smiles/smarts/parser/SmartsQueryVisitor.html" title="class in org.openscience.cdk.smiles.smarts.parser">SmartsQueryVisitor</a></li>
<li><a href="org/openscience/cdk/isomorphism/SmartsStereoMatch.html" title="class in org.openscience.cdk.isomorphism">SmartsStereoMatch</a></li>
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