Added a method to create BridgeDB Xref objects

egonw · Jan 12, 2012 · 6cb629e · 6cb629e
1 parent af5fd32
commit 6cb629e
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Showing 2 changed files with 15 additions and 1 deletion.
diff --git a/plugins/net.bioclipse.bridgedb/src/net/bioclipse/bridgedb/business/BridgedbManager.java b/plugins/net.bioclipse.bridgedb/src/net/bioclipse/bridgedb/business/BridgedbManager.java
@@ -132,4 +132,8 @@ private Set<String> extractIdentifierStrings(Set<Xref> dests) {
     	    results.add(dest.getURN());
 		return results;
 	}
+
+	public Xref xref(String identifier, String source) throws BioclipseException {
+		return new Xref(identifier, getSource(source));
+	}
 }
diff --git a/plugins/net.bioclipse.bridgedb/src/net/bioclipse/bridgedb/business/IBridgedbManager.java b/plugins/net.bioclipse.bridgedb/src/net/bioclipse/bridgedb/business/IBridgedbManager.java
@@ -19,6 +19,7 @@
 import net.bioclipse.managers.business.IBioclipseManager;
 
 import org.bridgedb.DataSource;
+import org.bridgedb.Xref;
 
 @PublishedClass(
     value="BridgeDB.org support.",
@@ -52,7 +53,8 @@ public interface IBridgedbManager extends IBioclipseManager {
     @Recorded
     @PublishedMethod(
         methodSummary="Return a BioDataSource for the given string. It throws a BioclipseException when an" +
-        		" unrecognized source String is passed.",
+        		" unrecognized source String is passed.  Use listAllSources() to" +
+        		" get a list of source codes.",
         params="String source"
     )
     public DataSource getSource(String source) throws BioclipseException;
@@ -70,4 +72,12 @@ public interface IBridgedbManager extends IBioclipseManager {
     )
     public Set<String> listAllSources();
 
+    @Recorded
+    @PublishedMethod(
+        methodSummary="Creates a BridgeBD Xref object from the given identifier and source. Use listAllSources() to" +
+        		" get a list of source codes.",
+        params="String identifier, String source"
+    )
+    public Xref xref(String identifier, String source);
+
 }