additional update for CDK 1.5.x

bioclipse · Oct 1, 2013 · ca72a34 · ca72a34
1 parent fe4271d
commit ca72a34
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 4 deletions.
diff --git a/plugins/net.bioclipse.ds.libsvm.tests/META-INF/MANIFEST.MF b/plugins/net.bioclipse.ds.libsvm.tests/META-INF/MANIFEST.MF
@@ -17,7 +17,6 @@ Require-Bundle: net.bioclipse.ds.libsvm,
  org.openscience.cdk.interfaces,
  org.openscience.cdk.standard,
  org.openscience.cdk.io,
- org.openscience.cdk.nonotify,
  net.bioclipse.ds.common,
  net.bioclipse.cdk.ui.sdfeditor,
  org.junit4,

diff --git a/plugins/net.bioclipse.ds.libsvm.tests/src/net/bioclipse/ds/libsvm/tests/TestSignLibsvm.java b/plugins/net.bioclipse.ds.libsvm.tests/src/net/bioclipse/ds/libsvm/tests/TestSignLibsvm.java
@@ -4,7 +4,6 @@
 import java.util.List;
 
 import junit.framework.Assert;
-
 import net.bioclipse.cdk.domain.CDKMolecule;
 import net.bioclipse.cdk.domain.ICDKMolecule;
 import net.bioclipse.core.business.BioclipseException;
@@ -13,7 +12,7 @@
 import net.bioclipse.ds.model.DSException;
 
 import org.junit.Test;
-import org.openscience.cdk.Molecule;
+import org.openscience.cdk.interfaces.IAtomContainer;
 import org.openscience.cdk.templates.MoleculeFactory;
 
 public class TestSignLibsvm {
@@ -31,7 +30,7 @@ public void TestReadModel() throws IOException, DSException, BioclipseException{
 		Assert.assertEquals(23226,model.getModelSignatures().size());
 		Assert.assertNotNull(model.getSvmModel());
 
-		Molecule mol = MoleculeFactory.makeBenzene();
+		IAtomContainer mol = MoleculeFactory.makeBenzene();
 		ICDKMolecule cdkmol = new CDKMolecule(mol);
 
 		List<String> molsigns = SignLibsvmUtils.generateSignatures(cdkmol,0,3);