Skip to content

Commit

Permalink
Updated the README: all should be links now; added the new, main ChEM…
Browse files Browse the repository at this point in the history
…BL paper; updated download link; added link to Kasabi
  • Loading branch information
egonw committed Mar 10, 2012
1 parent f43f070 commit a85b092
Showing 1 changed file with 17 additions and 9 deletions.
26 changes: 17 additions & 9 deletions README.markdown
Expand Up @@ -5,45 +5,53 @@ ChEMBL is medicinal chemistry database by the team of dr. J. Overington at the E

http://www.ebi.ac.uk/chembl/

It is detailed in this paper (doi:10.1093/nar/gkr777):

http://nar.oxfordjournals.org/content/early/2011/09/22/nar.gkr777.short

This project develops, releases, and hosts a RDF version of ChEMBL. The main SPARQL
end point is available from Uppsala University at:

http://rdf.farmbio.uu.se/chembl/sparql
http://rdf.farmbio.uu.se/chembl/sparql

Or as SNORQL at:

http://rdf.farmbio.uu.se/chembl/snorql
http://rdf.farmbio.uu.se/chembl/snorql

Additionally, the data is available as Linked Data via Kasabi:

http://kasabi.com/dataset/chembl-rdf

# Download

Alternatively, you can download the full set of triples as n3 from:

https://github.com/downloads/egonw/chembl.rdf/chembl.n3.tar.bz2
http://semantics.bigcat.unimaas.nl/chembl12/

# Copyright / License

The ChEMBL database is copyrighted by John Overington et al., and licensed CC-BY-SA:

http://creativecommons.org/licenses/by-sa/3.0/
http://creativecommons.org/licenses/by-sa/3.0/

as explained on:

http://www.ebi.ac.uk/chembldb/
ftp://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/releases/chembl_13/LICENSE
http://www.ebi.ac.uk/chembldb/
ftp://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/releases/chembl_13/LICENSE

The ChEMBL FAQ explains how you can fullfil the attribution part of the license:

https://www.ebi.ac.uk/chembldb/index.php/faq#faq29
https://www.ebi.ac.uk/chembldb/index.php/faq#faq29

If you use this RDF version of ChEMBL, you should cite this paper, pending
a more dedicated paper, where the RDF version of ChEMBL has been used and
demonstrated:

http://www.jbiomedsem.com/content/2/S1/S6
http://www.jbiomedsem.com/content/2/S1/S6

These scripts were tested against version 13 of ChEMBL, as downloaded from:

ftp://ftp.ebi.ac.uk/pub/databases/chembl/releases/chembl_13/
ftp://ftp.ebi.ac.uk/pub/databases/chembl/releases/chembl_13/

# Requirements

Expand Down

0 comments on commit a85b092

Please sign in to comment.