Use the PRO ontology, for protein

egonw · Mar 2, 2012 · 5c31df6 · 5c31df6
1 parent a5e9130
commit 5c31df6
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Showing 2 changed files with 6 additions and 1 deletion.
diff --git a/namespaces.php b/namespaces.php
@@ -15,6 +15,7 @@
 $NMR = "http://www.nmrshiftdb.org/onto#";
 $CHEMINF = "http://semanticscience.org/resource/";
 $CHEBI = "http://purl.org/obo/owl/CHEBI#";
+$PRO = "http://purl.obolibrary.org/obo/";
 
 $ONTO = "http://rdf.farmbio.uu.se/chembl/onto/#";
 $ACT = $rooturi . "activity/";

diff --git a/targets.php b/targets.php
@@ -19,7 +19,11 @@
 while ($row = mysql_fetch_assoc($allIDs)) {
   $target = $TRG . "t" . $row['tid'];
   echo triple( $target, $RDF . "type", $ONTO . "Target" );
-  echo triple( $target, $ONTO . "hasTargetType", $TGT . $row['target_type'] );
+  if ($row['target_type'] = 'PROTEIN') {
+    echo triple( $target, $RDFS . "subClassOf", $PRO . "PR_000000001" );
+  } else {
+    echo triple( $target, $ONTO . "hasTargetType", $TGT . $row['target_type'] );
+  }
   if ($row['organism'])
     echo data_triple( $target, $ONTO . "organism", $row['organism'] );
   if ($row['description'])