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Added numeration to the different steps of the cheat sheet.
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Signed-off-by: jonalv <jonathan.alvarsson@gmail.com>
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@KlasJoensson @jonalv
KlasJoensson authored and jonalv committed Jan 20, 2012
1 parent 79a2007 commit 1c63885
Showing 1 changed file with 7 additions and 7 deletions.
14 changes: 7 additions & 7 deletions plugins/net.bioclipse.chemoinformatics/cheatsheets/GeneralChemoinformaticsCheatSheet.xml
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</intro>
<item
href="/net.bioclipse.cdk.jchempaint/doc/jcpEditor.html"
title="Open and Edit structures in 2D">
title="Step 1: Open and Edit structures in 2D">
<description>
The JChemPaint editor (JCP) allows graphical viewing and editing of 2D
diagrams of chemical structures in various formats. You can also
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<item
href="/net.bioclipse.cdk.jchempaint/doc/jcpEditor.html"
title="Draw new structures in 2D from scratch">
title="Step 2: Draw new structures in 2D from scratch">
<description>
To start drawing a new molecule in 2D, use the top menu <b>File > New... </b> and select <b>Molecule</b>.
</description>
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<item
href="/net.bioclipse.spectrum/html/sdfEditor.html"
title="Open files with multiple structures">
title="Step 3: Open files with multiple structures">
<description>
Files with multiple structures (MDL SD files, and SMILES files) are
handled by the Molecule Table Editor. Double-click a molecule-file
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</item>

<item
title="Create 2D and 3D coordinates">
title="Step 4: Create 2D and 3D coordinates">
<description>
You can create 2D and 3D coordinates for molecules.
Right click on the file in the Navigator and choose one of the Generate 2D or 3D options.
</description>
</item>
<item
href="/net.bioclipse.cdk.smartsmatching/html/smartsmatchingview.html"
title="Smarts matching">
title="Step 5: Smarts matching">
<description>
Show the view Smarts Matching from the menu <b>Window > Show view > Other...</b> and select <b>SmartsMatching</b> in the <b>Cheminformatics</b> folder.
<br/><br/>
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<item
href="/net.bioclipse.webservices/doc/wsplugin.html"
title="Query and download proteins via web service">
title="Step 6: Query and download proteins via web service">
<description>
You can search and query a variety of external (EBI) databases using the Wizard at <b>File > New > Cheminformatics > Query WSDbfetch at EBI</b>.
</description>
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<item
href="/net.bioclipse.webservices/doc/wsplugin.html"
title="Search and download chemical structures from PubChem">
title="Step 7: Search and download chemical structures from PubChem">
<description>
It is possible to search and download compounds from PubChem using teh Wizard at <b>File > New > Cheminformatics > Get structures from PubChem</b>.
</description>
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