Fixed sdf 3d coordianate genration.

If the input file ends with .sdf the output will too
bioclipse · Mar 16, 2012 · b5aa4df · b5aa4df
1 parent 74e13ae
commit b5aa4df
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/...ins/net.bioclipse.balloon.business/src/net/bioclipse/balloon/business/BalloonManager.java b/...ins/net.bioclipse.balloon.business/src/net/bioclipse/balloon/business/BalloonManager.java
@@ -445,11 +445,12 @@ private String constructOutputFilename( String inputfile,
         String path = inputfile.substring( 0, lastpathsep );
         String name = inputfile.substring( lastpathsep + 1, 
                                            inputfile.length() - 4 );
-//        String currentExtension = inputfile.substring( inputfile.length() - 4, 
-//                                                       inputfile.length() );
+        String currentExtension = inputfile.substring( inputfile.length() - 4, 
+                                                       inputfile.length() );
 
         String ext = "";
         if (numConformations>1) ext = ".sdf";
+        else if(currentExtension.equals(".sdf")) ext = ".sdf";
         else ext = ".mdl";
 //        else ext = currentExtension;
         //TODO: bring this back if we decide to convert back to CML after balloon