Fixes for msplicer

shogun-toolbox · Sep 3, 2012 · e7c3462 · e7c3462
1 parent fd33d77
commit e7c3462
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/applications/msplicer/signal_detectors.py b/applications/msplicer/signal_detectors.py
@@ -73,11 +73,11 @@ def get_predictions_from_seqdict(self, seqdic, site):
 				s=sequence[i-self.window_left:i+self.window_right+2]
 				testdat.append(s)
 
-		t=StringCharFeatures(DNA)
-		t.set_string_features(testdat)
+		t=StringCharFeatures(testdat, DNA)
 
 		self.wd_kernel.init(self.traindat, t)
-		l=self.svm.classify().get_labels()
+		self.svm.set_kernel(self.wd_kernel)
+		l=self.svm.apply().get_labels()
 		sys.stderr.write("\n...done...\n")
 
 		k=0